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Hi,
I would like to use mri_conv to import NIfTI/json (not organized in BIDS ).
When I export the data (via the basket), the json is copied as is and therefore does not have the same format as…
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Couple of questions:
1. What needs to be done/whats blocking the nifti implementation?
2. Other than the loaders, what does the nifti implementation change in the process?
- From my unde…
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Hey,
I have played around with the Vista3D model as I want to pseudolabel a few CT images from the LIDC dataset for MAISI. Unfortunately, I am encountering a problem where the segmentations look qu…
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## Description
Currently Webknossos annotations are in the `*.wkw` format. We should create scripts to export and convert these annotations to either OME-Zarr or NIfTI-Zarr. We have decided to se…
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### Describe the Bug
We converted some input nifti files to dcm. We then run the files through a model and get the segmentation. We converted the segmentation as well into dcm. Using the ohif viewer …
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I see from the source code you support NIfTI-1, but it's unclear if you support NIfTI-2 too, and both endian formats.
https://brainder.org/2015/04/03/the-nifti-2-file-format/
I think it should b…
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Hi @baifanxxx @BAAI-DCAI ,
thank you for this amazing work !
Im trying to do the inference of M3D-LaMed-Phi-3-4B
Th question I have is,
![image](https://github.com/user-attachments/assets/25827…
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Hi,
is it possible to run comp2comp on google colab?
and do you consider to integrate nifti format for input and output images?
Best,
Aymen
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Hey @JunMa11 ,
I am an academic radiologist. I enjoy experimenting with MedSAM. Congratulations on this significant contribution!!
I am comparing MedSAM's segmentation results with those of nnUNet. …
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I wanted to ask if it's possible to run inference using DCM sequences directly with nnU-Net, without the need to convert them to NIfTI format.
Thank you for your help!