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Hi,
I would like to use mri_conv to import NIfTI/json (not organized in BIDS ).
When I export the data (via the basket), the json is copied as is and therefore does not have the same format as…
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## Description
Currently Webknossos annotations are in the `*.wkw` format. We should create scripts to export and convert these annotations to either OME-Zarr or NIfTI-Zarr. We have decided to se…
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### Describe the Bug
We converted some input nifti files to dcm. We then run the files through a model and get the segmentation. We converted the segmentation as well into dcm. Using the ohif viewer …
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Hi @baifanxxx @BAAI-DCAI ,
thank you for this amazing work !
Im trying to do the inference of M3D-LaMed-Phi-3-4B
Th question I have is,
![image](https://github.com/user-attachments/assets/25827…
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I see from the source code you support NIfTI-1, but it's unclear if you support NIfTI-2 too, and both endian formats.
https://brainder.org/2015/04/03/the-nifti-2-file-format/
I think it should b…
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I wanted to ask if it's possible to run inference using DCM sequences directly with nnU-Net, without the need to convert them to NIfTI format.
Thank you for your help!
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## Description
When conforming happens from inside run_prediction it adds incorrect "TR" information to the image header.
## Steps to Reproduce
Run run_prediction with an already conform inp…
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Hi, I wanted to know what is the approach to predict an image's masks using pairs of image and masks as support.
Is there some required preprocessing? Do I have to save my data into some specific for…
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How can I import DICOM images for segmentation or other labeling task ? Converting to png may not be a good choice as the transforming threshold needs to be adjusted at any time.
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