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We are committing to `nmdc_schema/nmdc_materialized_patterns.yaml` as our default schema file
`nmdc_schema/nmdc_schema_merged.yaml` doesn't serve any other purpose now and just adds confusion
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This ticket derives URL checking work done in https://github.com/microbiomedata/nmdc_automation/issues/186
All 79 metagenome_assembly_set records from nmdc:sty-11-547rwq94 have a different blade i…
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Test execution of NMDC workflows. Launch workflows and ensure workflow output matches expectations
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15 mags_activity_set
```
{
"_id" : ObjectId("649b0052ec087f6bbab34903"),
"id" : "nmdc:wfmag-11-t8gc3c64.1",
"has_input" : "nmdc:dobj-11-y2f0gn35"
},
…
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We need to get to the bottom of what I believe are related issues. In both cases the range in linkml is specified with any_of but Jing's code, which i believe is using the schema.json, complains about…
aclum updated
23 hours ago
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#### Tasks
- [x] 1. Determine whether the Runtime is using that variant of the schema because it depends upon something that is specified to it, or only because it _used to_ depend upon something s…
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**Describe the bug**
The error message describes an issue with the incorrect slot.
**To reproduce**
Steps to reproduce the behavior:
poetry run linkml-validate -s ../../../project/nmdc_materiali…
aclum updated
2 weeks ago
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I believe the runtime code is currently loading `nmdc.schema.json`, this does not have the regular expression patterns we need, those are in `nmdc_materialized_patterns.schema.json` which is also part…
aclum updated
2 weeks ago
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some `structured_patterns` in the nmdc-schema appear to start with a ^ and others don't , that means we have some structured_patterns that materialize to something starting with ^^
separated out fr…