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Hello - I've been trying to use `valis-wsi` to register a series of Leica CZI H&E slide images. I've had some success using Matlab tools to register this dataset, and I wanted to compare those results…
NichD updated
4 months ago
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LOCI performs multi-tile image acquisitions from multiple types of systems:
1. OWS (WiscScan) OME-TIFFs
2. OpenScan OME-TIFFs
3. PrairieView TIFFs/OME-TIFFs
Our scientists are having difficult…
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# Image Alignment
Image alignment in starfish is driven by the need to carry out two tasks:
1. Identify the cell of origin for each spot
2. Identify mRNA molecules whose identity is encoded across…
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# User stories: coordinateTransformations
This is a collection of the example applications / user stories of coordinateTransformations from #57. These examples should be helpful for the next propos…
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Hi,
I have 10 images, each with hematoxylin and a DAB staining for different markers on the same slide that were stained sequentially. Now I would like to align and register the images based on the h…
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Hi all,
Thanks again for all the hard work on BigStitcher. We are working with data from a new light sheet instrument in our lab and have run into an issue I am hoping for advice on.
We have a d…
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Probably not for v1, but still putting it here.
Assuming we have one abstract Entity class, and PoliticalEntity, Event and Person are subclasses. Does DiplomaticRelation only represent the `Politic…
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Hi! I discovered your Minecraft clone a long time ago and downloaded it. I've been working on my version ever since, and was wondering if you could check it out! https://github.com/dcmrobin/UnityMinec…
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Hi,
we have a few datasets that require rotating individual tiles. To achieve this while maintaining their absolute position, I am applying the following transformation strategy:
- translate the…
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A chapter on getting started with the Grunt.js task runner. The common things I see front-enders new to Grunt trying to do include:
- Getting started (Gruntfile, package.json)
- Adding a linter
- Int…