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Hello there!
I've been testing the VIRify v2.0 and I realised that the taxonomic annotation on the GFF file has the ranks inverted.
For instance:
taxonomy=Entomopoxvirinae;Poxviridae;Chitovira…
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Hello,
Will the databases of HMMs ( cellular organisms and GVOG) be updated?
If I want to build my own database, how to configure it to be compatible with viralrecall?
How can I skip the prodigal…
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I used "trinotate_report_summary.pl" to generate a "cXp_summary.html" file, however, this html file shows up blank when opened in Google Chrome or Firefox.
Why?
and, here are the contents of the…
ljyls updated
3 years ago
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as a taxonomist/scientist/ecologist, I'd like to get all the interactions within a specific taxonomic domain (e.g., all bees in North America, all fly pollinators and bee pollinators, any interaction …
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Hi,
I used geNomad to identify viruses in addition to VirSorter2 and Cenote-taker2. Subsequently, I used geNomad's annotate module to assign taxonomy to all viral contigs, including those identifie…
xwu35 updated
12 months ago
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Hi Dear Wei,
I was wondering to see if there is a placeholder for clade rank?
I'm using this command and looking to have 8 columns for output (now missing clade rank):
```
./taxonkit reforma…
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@jhpoelen: I am continuing the work we started during the hackaton in Romania of this year. Specifically, I want to create a network of Vespa velutina containing first order and second order interacti…
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### Setup
I am reporting a problem with Biopython version, Python version, and operating
system as follows:
```python
import sys; print(sys.version)
import platform; print(platform.python_imp…
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I used "trinotate_report_summary.pl" of Trinotate (https://github.com/Trinotate/Trinotate/releases/tag/Trinotate-v3.2.1) to generate a "cXp_summary.html" file, however, this html file shows up blank w…
ljyls updated
3 years ago