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As far as I understand, part of the resolution to gh-53 is that `pmx_integrate_ode_adams`, `pmx_integrate_ode_bdf`, and `pmx_integrate_ode_rk45` are no longer intended to be exposed to the user.
Th…
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This is a recurring problem people run into when doing Bayesian ODEs (I think this can happen in Stan too, not just Turing).
Relevant discourse thread: https://discourse.julialang.org/t/turing-nuts…
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# Priority list
1. Stochastic ODEs via basico
2. Constraint-based analysis (CBM) via cobrapy
3. Logic models via colomoto notebook
4. Agent-based models via TBD
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We should add a test for combined linCmt() and ODE-based models to ensure that they work as expected. My expectations would be that `linCmt()` would evaluate at each ODE time step and time-variance o…
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First, this package is a major contribution towards using ODE models with Stan. Thank you!
My usage of ODE models usually involves equations that are forced by a vector of weather variables like so…
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Hi, just found your library! Very exciting.
Were you planning to add support for ODE simulation with diffrax?
I use diffrax to simulate my models and optimistix to fit them, and more generally wo…
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I'm currently implementing a model where some species evolve according to ODEs and some according to the SSA. This causes some reactions to have variable rates (due to the ODEs), even if their rate on…
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See [https://epidemicsonnetworks.readthedocs.io/en/latest/EoN.html](https://epidemicsonnetworks.readthedocs.io/en/latest/EoN.html) for Python implementations - just the analytic solutions for now
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Diffeqs should perhaps updated to use the new `ode_rk45 `. I can take a look at this personally, if you want.
Sorry for the initial blank issue, I hit enter by accident while drafting this 😕 .
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### Description
To improve the speed of our ODE models, I'd like to add `CVODE` from SUNDIALS to our suite of C solvers in addition to `IDA`.
More details in https://github.com/pybamm-team/PyBaM…