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Hi,
Thanks for the super impressive tool which helps me a lot.
But I found some issues when running deepcell mesmer: only nuclei mask.tif was obtained for ome.tiff file/non-RGB tif files. My ome…
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https://github.com/ome/bioformats/pull/4234 highlights that there can be cases where memo file loading breaks in a way that our current tests do not catch. Catching these issues by eye in code review …
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@haesleinhuepf given your call for contributing tests: Are additional small tests on extracting information from OME-Zarrs in scope for this repo? I'd be happy to add some to encourage LLMs to learn a…
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## State of the art
Docker images for the OME Files C++ library have been originally developed in decoupled repositories ([Ubuntu 16.04](https://github.com/openmicroscopy/ome-files-cpp-u1604-docker…
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**User story**
GeoMx outputs store the "segments" in binary fields within the OME-XML
**Preferred solution**
Add a fileType for `obsSegmentations.ome-tiff-xml` (as opposed to `obsSegmentation…
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Hi @haesleinhuepf
In terms of test cases:
- opening ome tiff files
- computing histogram of image intensities
- fft or fourier transform
- operations involving processing shapely polygons
…
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I am trying to stitch a large image of a Mouse Whole Brain of a single channel without autofluorescence, acquired by a LSFM, using the ClearMap GUI.
I have raw tile files already converted to .npy, w…
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Does slideio accept images in OME-TIFF format ?
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*This issue captures the requirements as well as the possible implementation choices for a first integration of OME metadata into the OME-NGFF container. The UoD team is targeting the specification as…
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Issue was raised in forum thread https://forum.image.sc/t/how-to-open-video-in-matlab-using-bioformats-plugin-when-the-source-data-is-split-into-multiple-tif-files/99909/6
Sample files reproducing …