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ClearAnatomics
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ClearMap
ClearMap 2 with WobblyStitcher, TubeMap and CellMap
https://clearanatomics.github.io/ClearMapDocumentation/
GNU General Public License v3.0
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Z dimension not detected for preview rigid stitching
#147
stellalessandra
opened
7 hours ago
0
ClearMap GUI missing "Run detection" button
#146
ved-sharma
opened
2 weeks ago
1
cannot import name 'Texture3D' from 'vispy.visuals.volume'
#145
c3rry
opened
1 month ago
1
No module named 'graph_tool'
#144
zoneby-Alex
opened
2 months ago
1
BUGFIX: Fixes Analysis/vasculature/get_orientation_from_normal_to_sur…
#143
RemiPomme
closed
2 months ago
0
modular implementations?
#142
peterlionelnewman
opened
3 months ago
0
missing ClearMap.Alignment.orientation module in branch vasculature_analysis
#141
edoumazane
closed
4 months ago
2
Elastix Error During Registration
#140
Stuff25
opened
5 months ago
0
Skipping Atlas Registration in TubeMap
#139
Stuff25
opened
5 months ago
0
Transform points error
#138
narasa0
opened
5 months ago
0
Stitching Issues
#137
Tas-V
opened
5 months ago
0
Traceback error when loading UI
#136
Stuff25
opened
5 months ago
0
Missing of wobbly_stitcher_rigid.jpg in folder: /ClearMap/gui/creator/graphics_resources/graphics_resources/
#135
Hackett278
opened
6 months ago
0
Inverse transformation to transform brain images onto atlas space
#134
kenjp1223
opened
6 months ago
1
Wobbly Stitcher crashing
#133
narasa0
closed
9 months ago
4
matplot not available from current channel found while installation
#132
KHBHH
opened
10 months ago
1
Some problems about Mapping the Fine-Scale Organization and Plasticity of the Brain Vasculature
#131
RenJiaY
opened
10 months ago
1
conda error while installation
#130
KHBHH
opened
10 months ago
5
.sh install meet some error
#129
qweasdf1354
opened
10 months ago
7
cannot compile ClearMap modules
#128
chongtianyifa
opened
11 months ago
8
Example dataset for CellMap and TubeMap
#127
Cyril27
opened
1 year ago
5
Numpy import issues with `ClearMap.compile`
#126
jemajet
opened
1 year ago
1
Fixed import error in StatisticsPointList.py
#125
jemajet
opened
1 year ago
0
Export ID numbers for ClearMap2.1?
#124
cardinger
opened
1 year ago
1
GUI: Alignment Issue
#123
cardinger
closed
1 year ago
4
Pytorch version not available anymore
#122
cardinger
closed
1 year ago
7
import ClearMap.Compile fails
#121
cardinger
closed
1 year ago
1
Compiler issues
#120
Vaitrix
closed
1 year ago
0
Question about the unit of vasculature radius
#119
mahsa106
closed
1 year ago
1
Resampling IndexError: tuple index out of range
#118
mahsa106
closed
5 months ago
4
Problem Plotting 3d Mesh
#117
mahsa106
opened
1 year ago
2
Adding CCFv3 annotation requires updating the "No label" values
#116
andrewsilberfeld
closed
1 year ago
0
Annotated_counts table counts area and their subdivision differently
#115
bhnrus
opened
1 year ago
1
clearmap results ID different than Allen Region ID
#114
etayaloni
opened
2 years ago
1
Cell Annotation Didn't Work...
#113
LaurenOtsuka
opened
2 years ago
2
Fix typo
#112
healthonrails
opened
2 years ago
1
registration troubleshooting
#111
andrewsilberfeld
closed
2 years ago
0
Bug: inverse transform
#110
andrewsilberfeld
closed
1 year ago
1
TypeError: key must be an int, slice, or sequence
#109
Xiaoyan3333
closed
1 year ago
5
Spyder 5.2.2 incompatible to Anaconda 3
#108
jeng87
opened
2 years ago
1
TubeMap Create a test data
#107
jeng87
opened
2 years ago
0
Stitching parameters for persistent duplications
#106
andrewsilberfeld
closed
2 years ago
0
TubeMap: "IndexError: list index out of range" while runnin the cell of Rigid z-alignment
#105
jeng87
opened
2 years ago
1
Alignment of warped atlas to autofluorescence looks correct but overlay of raw atlas with transformed cells appears wrong.
#104
andrewsilberfeld
closed
2 years ago
1
How to generate intensity profile?
#103
andrewsilberfeld
opened
2 years ago
2
Cannot find name for type 'elastix_resampled_to_auto'!
#102
EPNSED
opened
2 years ago
3
Cell alignment section - file not found error
#101
jeng87
closed
2 years ago
1
Collection of changes from 2021 Kavli iDISCO Workshop. Changes are primarily to allow ClearMap to run on OSX
#100
ricardo-re-azevedo
closed
1 year ago
0
Elastiz error
#99
Hesham3esa
opened
2 years ago
1
Duplicate maxima coordinates detected with different 'source' and 'size' measurements
#98
vv-21
opened
2 years ago
0
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