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Describe the issue:
We are currently using two different long-read sequencing systems: PacBio Direct and PacBio Capture.
We are encountering two specific issues:
1. **PacBio Direct Data (top t…
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Hi
I have two sets of input data, one from Nanopore and the other from PacBio. Could you please advise on the ‘--data_type’ parameter? Should I choose ‘pacbio_ccs’ or ‘nanopore’? My goal is to obtain…
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### Description of feature
There has been a request for a PacBio only run. This is something not currently supported, however, should be simple enough to implement. Related to #115
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Hello dear developers,
I will try PECAT for the first time for a diploid genome of about 500Mb and I am writing to ask for script recommendations. There are some template cfgfile files for some spe…
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Hi,
A new 1000- individual population long-read reference was just released for PacBio
https://www.pacb.com/press_releases/pacbio-and-international-research-consortium-colors-announce-release-of-fir…
gevro updated
2 weeks ago
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Hi Sergey,
Thank you for creating such an impressive assembly tool! I recently tested both versions 2.0 and 2.1 using various genome coverages. However, I found that over 100 BUSCO genes are missin…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Have you loaded the SQANTI3.env conda environment?
- [ ] I have loaded the SQANTI3.env conda environment
### …
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We're just getting in our first standard 16S data from the PacBio Revio which is using the [Kinnex kit](https://www.pacb.com/technology/kinnex/), and will soon be getting 16S-ITS-23S data. I know the…
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This code
```console
nextflow run fmalmeida/ngs-preprocess -r dev -latest -profile docker --sra_ids "./input/sra_ids.txt" --output illumina_single --shortreads_type "single" --fastp_addit…
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Hello,
I am currently trying to run finder on three whole genome samples:
1. Sequenced with Illumina HiSeq x ten
2. Sequenced with Illumina Novaseq 6000
3. Sequenced with PacBio SMRT
Samples…