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### Description of feature
The license of PacBio's [HiFiCNV](https://github.com/PacificBiosciences/HiFiCNV) and [HiPhase](https://github.com/PacificBiosciences/HiPhase) prohibits usage with data that…
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*Describe the bug*
FCS description for contaminant is not present in UniVec
*To Reproduce*
Not applicable, FCS run completed. Question is with output and missing data from UniVec database
*…
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Hello sir,
Long time fan and user of Flye, Abruijn, etc.
I have three datasets:
- PacBio HiFi
- 90-95% accurate ultra-long ONT
- Hi-C
I know there are other assemblers that may out-perform…
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### Description of feature
Calculate the percentage of PacBio read data filtered before alignment. This was flagged by Kamil.
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**User story**
As Craig, I would like a new tag set for new barcode plates A, B, C and D so I can add tags to the pipeline.
**Primary Contacts**
- Craig Corton - chc@sanger.ac.uk
- James Watts…
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Hi,Tobias. Thanks for this great tools. The lorax can detect telomere sequence in longread data. In your papar, ont-reads were used. I am interested whether this tool can also be used in pacbio hifi d…
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Hi there, thanks for this powerful tool for isoform assembly and quantification. I'm wondering is it possible to **specify the minimal number of supporting reads or samples** (defined by bam tag RG) f…
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Hello,
Would it be possible to get support for using an input bam file. For example, both PacBio and ONT produce data in unaligned bam format. Thank you.
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Hi,
I have Pacbio FLNC reads in fastq format. What options should be specified while running the tool. I was thinking
`--data_type pacbio --fl_data`. Is this correct?
Thanks
Abhijit
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Hi Matt,
When running HiPhase on a few samples, I found some of them report the error `assertion failed: max_span != previous_pos`, the full log is as following.
```
thread 'main' panicked at s…