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PacificBiosciences
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HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
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updates for v1.4.4
#45
holtjma
closed
3 weeks ago
0
how to deal with unphased variants in the output
#44
WeiCSong
closed
3 weeks ago
3
updates for v1.4.3
#43
holtjma
closed
4 weeks ago
0
Inconsistent Haplotype
#42
hangsuUNC
closed
1 month ago
4
can the three output vcf directly concatenate?
#41
WeiCSong
closed
1 month ago
2
gVCF + VCF processing
#40
mrvollger
closed
2 months ago
6
thread 'main' panicked error
#39
GuidoGallo
closed
2 months ago
3
possibility to utilize information from phased bam files
#38
WeiCSong
closed
2 months ago
4
ERROR : 0 matched samples for phasing
#37
Oracle6543
closed
3 months ago
2
minor patch for TRGT 1.0
#36
holtjma
closed
4 months ago
0
sync changes for v1.4.1
#35
holtjma
closed
4 months ago
0
[Question] Phasing of rs36056539 in NA19226
#34
davidyuyuan
closed
4 months ago
3
[Question] information in the filter column of vcfs
#33
hangsuUNC
closed
4 months ago
2
[Suggestion] reducing messages to STDOUT to speed up the utility
#32
davidyuyuan
closed
4 months ago
3
Normalization of INDELs: required or should be avoided
#31
davidyuyuan
closed
5 months ago
3
Phase vcf with pre phased reads
#30
mrvollger
closed
5 months ago
6
Expected memory usage
#29
mrvollger
closed
6 months ago
3
Dual mode change
#28
holtjma
closed
6 months ago
0
Error while parsing VCF file: FORMAT columns
#27
hangsuUNC
closed
6 months ago
3
Running HiPhase with tumor-normal pair
#26
aysegokce
closed
7 months ago
2
Feature request: haplotag in phased VCF files
#25
andyjslee
closed
7 months ago
2
syncing changes for 1.3.0
#24
holtjma
closed
7 months ago
0
changes for IUPAC fix and WFAGraph boundaries
#23
holtjma
closed
7 months ago
0
synching of csi_indexing fix
#22
holtjma
closed
7 months ago
0
changes for v1.1.0
#21
holtjma
closed
9 months ago
0
STR support
#20
holtjma
closed
10 months ago
1
reference letter case issue
#19
splaisan
closed
10 months ago
2
A question about HP tag
#18
oceancongliu
closed
11 months ago
6
note the panic fix in changelog
#17
holtjma
closed
1 year ago
0
Recommendations for input vcf
#16
mrvollger
closed
1 year ago
3
Encountered max_edit_distance check
#15
wdecoster
closed
1 year ago
6
changes for v0.10.1
#14
holtjma
closed
1 year ago
0
segmentation fault (core dumped)
#13
ZexuanZhao
closed
1 year ago
2
Error “thread '<unnamed>' panicked at 'assertion failed: `(left == right)`” occurred while HIPhase working
#12
linlin-coder
closed
1 year ago
7
updating changelog for 0.10.0
#11
holtjma
closed
1 year ago
0
syncs documentation for v0.9.0
#10
holtjma
closed
1 year ago
0
Poor utilization of threads (maybe user error?)
#9
mrvollger
closed
1 year ago
6
documentation changes for v0.8.1
#8
holtjma
closed
1 year ago
0
RUST error when phasing with SV VCF file
#7
Audald
closed
1 year ago
7
Feature request: CRAM compatible
#6
Audald
closed
1 year ago
6
Question on tagging of supplemental alignments
#5
mrvollger
closed
1 year ago
2
Feature request: optional file containing read haplotype assignments
#4
holtjma
closed
1 year ago
1
Feature request: ability to ignore read groups
#3
holtjma
closed
1 year ago
1
document update for multi-sample VCF phasing
#2
holtjma
closed
1 year ago
0
Documentation
#1
holtjma
closed
1 year ago
2