issues
search
PacificBiosciences
/
HiPhase
Small variant, structural variant, and short tandem repeat phasing tool for PacBio HiFi reads
Other
70
stars
4
forks
source link
issues
Newest
Newest
Most commented
Recently updated
Oldest
Least commented
Least recently updated
assertion failed: max_span != previous_pos
#55
Han-Cao
opened
11 hours ago
2
Can I use the BAM from other technologies for phasing ?
#54
charliechen912ilovbash
closed
1 day ago
1
Questions on input VCFs
#53
Han-Cao
closed
1 day ago
3
How to use HiPhase to get haplotype-specific Somatic SNV/INDEL/SV?
#52
DayTimeMouse
closed
1 week ago
8
How to Generate Haplotype 1 and 2 FASTA Files Using Phased VCF from HiPhase
#51
ClarenceHsiang
closed
1 month ago
5
Output Phase Block GTF
#50
minw2828
closed
1 month ago
3
Can you embed the ref in CRAM outputs
#49
mrvollger
closed
1 month ago
3
One read has two HP tags
#48
ywzhang071394
closed
1 month ago
2
changes to patch bug in bam tag removal
#47
holtjma
closed
2 months ago
0
Failing to overwrite existing phasing tags in the bam file
#46
mrvollger
closed
2 months ago
9
updates for v1.4.4
#45
holtjma
closed
3 months ago
0
how to deal with unphased variants in the output
#44
WeiCSong
closed
3 months ago
3
updates for v1.4.3
#43
holtjma
closed
3 months ago
0
Inconsistent Haplotype
#42
hangsuUNC
closed
3 months ago
4
can the three output vcf directly concatenate?
#41
WeiCSong
closed
4 months ago
2
gVCF + VCF processing
#40
mrvollger
closed
5 months ago
6
thread 'main' panicked error
#39
GuidoGallo
closed
5 months ago
3
possibility to utilize information from phased bam files
#38
WeiCSong
closed
5 months ago
4
ERROR : 0 matched samples for phasing
#37
Oracle6543
closed
5 months ago
2
minor patch for TRGT 1.0
#36
holtjma
closed
6 months ago
0
sync changes for v1.4.1
#35
holtjma
closed
6 months ago
0
[Question] Phasing of rs36056539 in NA19226
#34
davidyuyuan
closed
7 months ago
3
[Question] information in the filter column of vcfs
#33
hangsuUNC
closed
7 months ago
2
[Suggestion] reducing messages to STDOUT to speed up the utility
#32
davidyuyuan
closed
6 months ago
3
Normalization of INDELs: required or should be avoided
#31
davidyuyuan
closed
7 months ago
3
Phase vcf with pre phased reads
#30
mrvollger
closed
8 months ago
6
Expected memory usage
#29
mrvollger
closed
8 months ago
3
Dual mode change
#28
holtjma
closed
9 months ago
0
Error while parsing VCF file: FORMAT columns
#27
hangsuUNC
closed
9 months ago
3
Running HiPhase with tumor-normal pair
#26
aysegokce
closed
9 months ago
2
Feature request: haplotag in phased VCF files
#25
andyjslee
closed
9 months ago
2
syncing changes for 1.3.0
#24
holtjma
closed
9 months ago
0
changes for IUPAC fix and WFAGraph boundaries
#23
holtjma
closed
10 months ago
0
synching of csi_indexing fix
#22
holtjma
closed
10 months ago
0
changes for v1.1.0
#21
holtjma
closed
11 months ago
0
STR support
#20
holtjma
closed
1 year ago
1
reference letter case issue
#19
splaisan
closed
1 year ago
2
A question about HP tag
#18
oceancongliu
closed
1 year ago
6
note the panic fix in changelog
#17
holtjma
closed
1 year ago
0
Recommendations for input vcf
#16
mrvollger
closed
1 year ago
3
Encountered max_edit_distance check
#15
wdecoster
closed
1 year ago
6
changes for v0.10.1
#14
holtjma
closed
1 year ago
0
segmentation fault (core dumped)
#13
ZexuanZhao
closed
1 year ago
2
Error “thread '<unnamed>' panicked at 'assertion failed: `(left == right)`” occurred while HIPhase working
#12
linlin-coder
closed
1 year ago
7
updating changelog for 0.10.0
#11
holtjma
closed
1 year ago
0
syncs documentation for v0.9.0
#10
holtjma
closed
1 year ago
0
Poor utilization of threads (maybe user error?)
#9
mrvollger
closed
1 year ago
6
documentation changes for v0.8.1
#8
holtjma
closed
1 year ago
0
RUST error when phasing with SV VCF file
#7
Audald
closed
1 year ago
7
Feature request: CRAM compatible
#6
Audald
closed
1 year ago
6
Next