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This will be similar to macro-synteny-blocks, but return a PAF file (format defined [here](https://github.com/lh3/miniasm/blob/master/PAF.md)) to applications such as JBrowse.
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### Description
_No response_
### Definition of Done
_No response_
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Hi,
I'm trying out this tool with a simple setup of a few bacterial genomes which I have aligned (progressively, i.e. not ava) w/minimap2 with the proper flags. I cat'ed the PAFs together (for A vs…
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### Description of feature
Dear nf-core & pangenome team,
I have a few questions about your great program.
Based on the link (https://github.com/nf-core/pangenome/blob/1.0.0/modules/nf-core/w…
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### Description
For example: add a acc demo
This is the preparation of the actual introduction lesson.
### Definition of Done
_No response_
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I have a difficulty to access the link to the article ' Crack baby' without subscribing to the issuer. Please advise.
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can somebody help me with this error:
filter_stdout, filter_stderr = cactus_call(parameters=filter_paf_cmd, check_output=True, returnStdErr=True, job_memory=job.memory)
File…
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Hi,
I am trying to assemble the genome of a worm, and I was hoping that minipolish would detect the mitochondrial genome and output it in the gfa file.
I have sequencing one of my worm species a l…
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Hello! I am trying to use dotPlotly to compare a PacBio long read de novo assembly (produced with PacBio's assembler IPA) to a reference genome to visualize structural variations. I aligned the assemb…
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- Quand je suis sur la fiche d'un PAF, j'ai un onglet OBSERVATIONS.
- Quand j'accède à cet onglet, celui-ci liste par date décroissante les observations dans une périmètre prédéfini autour du PAF (pa…