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I have a set of sequences that are definitely homologous. However some of them are in negative strand and I don't know which of them are. Therefore I cannot use `--allpairs_global` directly since sequ…
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## Platform
- SeqAn version: 3.3.0
- Operating system:
> Linux bpb23-acc 5.4.0-136-generic #153-Ubuntu SMP Thu Nov 24 15:56:58 UTC 2022 x86_64 x86_64 x86_64 GNU/Linux
- Compiler: x86_…
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Hi! I see you mentioned in the ReadMe that "use an existing method to calculate pairwise alignment candidates", but I can't find the source code of the method to calculate it. Could you please realse …
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Hello,
I'm getting the following error as shown below when running on a series of bam files. Bam files we're generated by mapping to a consensus sequence generated from an initial alignment
`T…
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Hello,
I'm interested in using GACT to perform sequence-to-sequence pairwise alignment. Can the GACT implementation be used as a standalone tool or library?
Thank you
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Hi,
I'm very interested in using edlib in some of the projects we're working on. One feature that would be great to have is the ability to build an alignment around a set of fixed constraints. …
rob-p updated
7 years ago
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Is it planned to include a selection of methods for pairwise multiple structural alignment to align a larger number of structures to each other, as e.g. matchmaker in ChimeraX?
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`_align_images_to_template` instantiates a bunch of `PairwiseAlignment` estimators, each of which generate their own parcellation of the data. I would argue that a single parcellation should be comput…
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Needed for getting aligned index for homo-polymer to achieve automatic syncing mutations over chain