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Hello,
I mapped my reads with minimap2 (default settings) on all high-quality viral MAGs from the IMG/VR database.
I tried applying metapresence after filtering the reads above 95% identity and …
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Hi,
I hope you are doing well.
I am using the Phabox software with the Phagcn module for taxonomy classification predictions. In the output, I encounter two specific terms in the results: "unknown"…
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Hi,
Thank you so much for creating such a great tool!
When I was doing phage taxonomy classification, I got different results with `PhaGCN2.0` vs. `PhaBOX's PhaGCN`. Your article suggests that `Pha…
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Hello developers,
Thank you for the tool. I am benchmarking taxor version: 0.1.3 SeqAn version: 3.4.0-rc.1on ZYMO sample sequenced on ONT using prebuilt database containing Archaea, Bacteria, Fung…
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phold version: v0.2.0
Python version: 3.11
Operating System: Linux
### Description
Running phold predict on multiple .gbk pharokka outputs
The process is stuck at the stage pasted below a…
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Greetings,
I have installed the Phamerator tool locally and it's working as expected but there are no phages available. My question; how can I load my phages and index it for Phamerator portal.
…
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Hi, Christian
I'm currently delving into the domain of _Providencia_ and _Klebsiella pneumoniae_ phages. Would you be interested in creating models?
Additionally, while PHASTER offers commendabl…
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Hi, I was wondering why VIBRANT doesn't output the taxonomic identities of predicted phages (should they be not novel ones)? In case VIBRANT does this, where can I find this info in the output?
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Hi,
I ran VIBRANT (version 1.2.1) on two bacterial genome sequences known to have phages as predicted with Virsorter2 and other tools, but the output from VIBRANT shows no phages. How do I troubles…
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Hi, I am trying to run virsorter2 on my contig sequences. I keep encountering this error in "circular-linear-split". At first, I thought i had duplicate sequence names but I checked and there were non…