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Port a workshop practical? This can build on the continuous trait tutorial but for the specific case where the traits are coordinates.
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Hi all, when I try to run the example given in the phylogeography with travel history (but using a tree instead of reconstructing the jumps for a single taxon), I get this error.
dr.app.tools.TaxaM…
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python3 animate_phylogeography.py
animate_phylogeography.py:5: DeprecationWarning: the imp module is deprecated in favour of importlib; see the module's documentation for alternative uses
import …
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```
What steps will reproduce the problem?
1. Run a discrete trait analysis
What is the expected output? What do you see instead?
Expect that the log file will contain samples from the posterior for…
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I tried to install a package hosted here: https://github.com/emmanuelparadis/pegas, but gh_install_packages() does not find the correct repository. Is there a way to point to the appropriate repositor…
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Dear DCollins,
I hope this message finds you well.
I came across your preprint article **"Phylogeography and reassortment patterns of human influenza A viruses in sub2 Saharan Africa"**. and found …
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https://github.com/phylogeography/SpreaD3/blob/f49e4a09fa70eff5cc32c9623c9bc97167fc3296/src/parsers/DiscreteLocationsParser.java#L44C4-L44C43
I cannot setup location coordinates from an example csv…
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About the Server :
Description: Ubuntu 16.04.7 LTS
Release: 16.04
Codename: xenial
I installed the ktmeaton plague phylogeography snakemake pipeline in an environment using mam…
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- Due to differences in assemblies' quality and completeness. I decide to first start with wgs raw reads in the sra database.
- all Bioprojects with sra records was searched on genebank:
```
(lep…