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The MEDLINE importer does not include PubMed IDs (PMID) when importing from PubMed text files.
This is problematic for two reasons:
1. PMID is an important identifier
2. JabRef includes PMID when…
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* **Do you want to request a *feature* or report a *bug*?**
Bug report
* **What is the current behavior?**
pmid value is 'null' for all entries in pharmcat json report (Pharmcat Version 2.13.0)…
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**Describe the bug**
There are rows that contain non-PMID IDs in the `PMID` field of the `literature/matches` data.
**Observed behaviour**
Specifically, there are IDs with the following prefixes …
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abolished protein kinase activity in response to osmotic stress
abolished protein kinase activity in response to oxidative stress
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- [ ] New term : normal cenH-derived RNA level
A cell phenotype observed in the vegetative growth phase of the life cycle in which the amount of RNA transcribed from cenH measured in a cell is normal…
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While processing across 90,000 PMIDs, the logs show these three PMIDs in a row with some kind of logic issue that is almost certainly metapub's fault:
```
2024-07-07 18:24:28 zephyr metapub[22639]…
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decreased mannosylinositol phosphorylceramide level/ MIPC
mannosylinositol phosphorylceramide absent from cell/ MIPC
not to self remove legacy annotations when this session goes through
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Related to ticket https://app.zenhub.com/workspaces/gwas-59df823c4a6feb3786810391/issues/gh/ebispot/xgwas-curator-tasks/26
PMID 30104761 is closed for submission as it was originally curated through …
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From @ValWood:
I noticed that quite a few are exact duplicates which looks odd,. Cen we
filter if it is exactly the same annotation / or less specific from the
same publication
exact duplicate…
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when we do checkpoint pathway, I'd like to recurate this paper to make sure the ectopic mutants are clear.