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In the future, I want to map the resequencing data of different species of onto my map genome.Then the group vcf with good classification is used to carry out the process of vgmpmap
I wonder if this …
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Hello
I am working on a clonal organism but we believe more and more it might not be so clonal. We have HiFi data and I want to use them to detect MAF. Is it possible with DeepVariant to detect tha…
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Hello,
While trying to run WhatsHap 1.7 polyphasegenetic (python 3.10.8) I sometimes get a ValueError. In this case I ran the same vcf file with different --complexity-support values and it only re…
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Hi!
First of all, thanks for your work with smudgeplot. Great idea!
I wanted to try smudgeplot on some WGS data of murine cancer cells, and thought I'd start with a normal control sample taken f…
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Do I understand it correctly that phaser.py will at maximum detect two different haplotypes per contig?
This is reasonable for perfect unambiguous mapping in diploids, but a severe limitation if (a) …