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KamilSJaron
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smudgeplot
Inference of ploidy and heterozygosity structure using whole genome sequencing data
Apache License 2.0
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The estimated multiplicity does not meet expectations and differs significantly
#161
GLking123
opened
1 day ago
0
Merging release Oriel 0.3.0
#160
KamilSJaron
closed
1 week ago
0
I messed up this pull request
#159
KamilSJaron
closed
1 week ago
0
Smudgeplot suggested diploid but assembly results indicative of tetraploid
#158
NatJWalker-Hale
closed
1 week ago
3
Should 1n coverage in smudgeplot be equal to the lambda in genomescope for allopolyploid?
#157
wu116
closed
2 weeks ago
4
smudge_pairs: command not found Error
#156
marekkokot
closed
1 week ago
2
sploidyplot results: diploid or tetraploid
#155
awesomedeer
closed
1 month ago
4
PloidyPlot: Table part ./.finall.ktab.1 is missing ?
#154
GLking123
closed
1 day ago
6
quantile filtering does not take freq into account
#153
KamilSJaron
closed
3 months ago
0
Hexaploid plant interpretation and coverage
#152
SamCT
closed
3 months ago
2
script execution never ends （Extremely Large .jf Files）
#151
GLking123
closed
3 months ago
1
Error while plotting Smudgeplot
#150
ktallen45
closed
3 months ago
3
SPloidyPlot detecting two smudges at the same positions warning
#149
mellamosummer
closed
3 months ago
4
Hexaploid Plant Analysis and Genome Assembly Questions
#148
BioOmics
closed
4 months ago
2
Interpreting a possible haploid
#147
jacquelinemattos
closed
4 months ago
5
plot err
#146
zskey-zn
opened
6 months ago
3
unable to start device PNG
#145
wwwfreya
closed
4 months ago
1
solve speckiness problem of smudgeplot
#144
KamilSJaron
closed
3 months ago
2
Error in estimate_1n_coverage_1d_subsets(total_pair_cov, minor_variant_rel_cov)
#143
ferrojm
closed
6 months ago
2
script execution never ends
#142
simleopold
closed
3 weeks ago
2
ploidyplot never finishes
#141
AlcaArctica
opened
7 months ago
2
Interpretation of (maybe) hybrid genomes - multiple species
#140
Sofieagerbaek
opened
8 months ago
1
smudgeplot.py hetkmers massive memory and walltime required
#139
tallnuttrbgv
closed
3 weeks ago
3
Fix typo
#138
Adamtaranto
closed
8 months ago
1
none results generating with huge dump files
#137
zhengyanstu
opened
9 months ago
6
Process was automatically killed
#136
yanjw123
opened
11 months ago
3
Problems compiling (and running) smudge_pairs
#135
RSchley
closed
8 months ago
5
unclear if genome is a diploid (Smudgeplot) or pentaploid (PloidyPlot)?
#134
sallycylau
closed
8 months ago
4
Request for feedback on smudgeplot optimization and interpretation (diploid? haploid?)
#133
margaretc-ho
opened
1 year ago
6
microsporidia smudgeplot
#132
samebdon
closed
1 year ago
1
Wrong coverage estimate?
#131
jgnunes
closed
1 year ago
4
Issues with make exec/PloidyPlot
#130
Kat0610
opened
1 year ago
4
FEEDBACK WANTED: Installation and running instructions for beta-version of Smudgeplot 0.3.0 Oriel
#129
KamilSJaron
closed
5 days ago
7
Allow other plotting styles
#128
KamilSJaron
opened
1 year ago
0
Prepare a testing battery
#127
KamilSJaron
opened
1 year ago
0
Difference between the result of smudgeplot and the real ploidy of species
#126
curtainDian
closed
1 year ago
5
Fix plot_histograms
#125
KamilSJaron
closed
1 year ago
1
Fix estimate_1n_coverage_highest_peak to take histogram
#124
KamilSJaron
closed
1 year ago
1
estimate_1n_coverage_1d_subsets averages over two distinct high peaks
#123
KamilSJaron
closed
5 days ago
1
Salix RAD-data smudgeplots
#122
KamilSJaron
closed
1 year ago
6
Smudgeplot is not suggesting an expected ploidy level
#121
OyukaKh
closed
1 year ago
2
Bump scipy from 1.2.1 to 1.10.0
#120
dependabot[bot]
closed
1 year ago
2
issue about smudge_pairs
#119
linshengnan09
closed
1 year ago
3
Question about kmc parameters
#118
ericgonzalezs
closed
1 year ago
3
Interpreting smudgeplot output
#117
eweinheimer
opened
1 year ago
10
Can not find R package 'smudgeplot'
#116
paka14
closed
1 year ago
1
Problems installing smudgeplot
#115
DaisyCrow
closed
1 year ago
3
Smudgeplot and genomescope
#114
nhartwic
closed
1 year ago
4
What is "1n = 25" on the smudgeplot plots?
#113
SuperYangZK
closed
1 year ago
2
Outputting smudgeplot in pdf format
#112
YannDussert
closed
1 year ago
2
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