-
### Operating System
CentOS 7
### Other Linux
_No response_
### Workflow Version
wf-pore-c.sif the latest
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No resp…
-
### Ask away!
作者您好,在我已经下载了wf-pore-c.sif情况下,我想使用singularity去运行wf-pore-c.sif的时候依旧会出现报错,申请需要拉去网络需求,然后就会终止我的任务。但是我已经在.bashrc的环境中设置了:
export NXF_SINGULARITY_CACHEDIR=/home/dingyuanhao/zxl_software/wf-por…
-
### Ask away!
[nextflow.log](https://github.com/user-attachments/files/16755804/nextflow.log)
[pore-c.err.txt](https://github.com/user-attachments/files/16755805/pore-c.err.txt)
[pore-c.out.txt](…
-
I followed your suggestion to modify the --chunk_size parameter of the run command again, but when I ran it again, the bug appeared again and the run was automatically interrupted on the…
-
Hello,
I was wondering whether there are any plans to incorporate support for Pore-C data instead of HiC for phasing? I assume the multiway contacts and longer fragment lengths would be in theory m…
-
### Ask away!
Hi,
I am using the wf-pore-c pipeline to analyze my PoreC data, the final goal is to create a chromosome-level assembly of Salmon fish. We can now run the wf in our SLURM cluster and…
-
### Ask away!
nextflow run epi2me-labs/wf-pore-c --help
Nextflow 24.04.3 is available - Please consider updating your version to it
N E X T F L O W ~ version 24.04.2
Launching `https://git…
-
### Operating System
CentOS 7
### Other Linux
CentOS 7
### Workflow Version
V1.2.1
### Workflow Execution
EPI2ME Desktop (Local)
### Other workflow execution
nextflow run ~/Software/wf-pore-c…
-
```
[04:46:22 - AnntateAln] Found 427679179 monomers in 28247142 concatemers.
Segmentation fault (core dumped)
srun: error: HOSTNAME: task 0: Exited with exit code 139
```
ahcm updated
7 months ago
-
I'm getting this error when trying to run uncalled4 4.1.0 on RNA data.
```
Auto-detected flowcell='FLO-MIN106' kit='SQK-RNA002'
/usr/include/c++/8/valarray:583: _Tp& st…