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Hello developers,
I updated from v1.3.0, which I had been using for some time, to v1.4.3 and encountered an issue running the pipeline on a SLURM cluster. Looking at the SLURM *.out log files we ha…
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Hello, author. When I want to reproduce ppmi_ Subtype_ Progress_ At this point in analysis, I would like to know how these three pkl files were generated. Can you provide relevant PKL files here
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Hi,
In some DICOM files, like those SPECT files available from PPMI database. mrinfo command provides wrong dimensions and mrconvert a wrong nifti output. See for example the attached file.
The…
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Currently I am awaiting datasets with a data format of "liked items by user", and that certain items are similar in nature.
Currently there are a few ways of reducing dimensionality:
* Logistic PCA,…
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Hello,
I am using Stringtie in conjunction with CIRIquant and am using the prepDE.py script to generate the gene count matrix for normalization. This has worked with no issue for me in the past, b…
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Is it possible to provide the following three pkl files inside ppmi_subtype_progression_analysis.ipynb with open(PPMI_CLINICAL_GEN_DATA_DIR_INSIDE / 'preprocessed/{}.pkl'.format( dataset_name), 'rb' )…
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请问一下,通过ppmi.baidubaike.word,如何得出两个词之间的相关性?
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Hi,
I tried to use the pypmi to turn the PPMI to BIDS. I tested on 3 subjects using the following code
import pypmi.bids pypmi.bids.convert_ppmi(raw_dir='data/raw/ppmi/dicoms', out_dir='data/raw…
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Hi,
I can access PPMI data using my login email and password using PPMI website. But When I try to access data using command like with the following command, get error of authentication.
`pypmi.…
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您好,请问能否提供一下ppmi的词表,目前提供的ppmi表示只有index和score,我想看看直观效果