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Hi,
First of all, thank you for such wonderful tool. I'm working with proteins translated from new ORFs and I predicted that the new protein interact with another protein, say for e.g. protein X. N…
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Dear DIANN,
Thanks a lot for developing this amazing software. We implemented it in our single cell workflow.
Unfortunately, we got 0 protein identification with our latest mouse single cell ex…
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Currently we just take the UniProt boundaries, which are based on Prosite annotations (profile-based regular expression searches).
We should look into whether there is a more appropriate procedure.
…
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Hello,
I'm having an issue with find_glycans() where glycan residues cannot be associated and trying to think of a way to deal with them. Specifically, I've found a few glycans from the PDB which …
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Dear DIA-NN team,
Currently we are running DIA-NN with TimsTOF SCP acquired samples. We get very good signal and clean spectra. Also the calibration status of the instrument is good (below 10ppm)…
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I can't see the pride cross references in the cross-references section of the protein page or on the api.
For examples, in `/data/projects/glygen/generated/datasets/unreviewed/human_protein_xref_p…
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There are 2 citations missing in the `human_protein_citations_refseq.csv`. I checked the missing PMIDs and they are still valid and the `human_protein_function_refseq.csv` does contain the PMIDs. I ch…
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I am encountering an issue with software v.1.0.2. It reports that 25 identified peptides were assigned to a protein, 4 of which are unique. I expected to see which peptides are shared and which are un…
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Currently, `viewer.expandAndCollapseSelection(proteinIdentifier)` uses the UniProt id to collapse or expand the proteins, but this is problematic on cases such as [this one on intact-portal](https://i…
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Hi All,
I'm working on this project where I add light and heavy-labeled peptides together, mix them and run on an Orbitrap, using LC-DIA.
Interestingly, when I create my own peptide library usi…