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I ran an MS-GF+(v2017.01.13) search using SearchGUI, and received the following errors when the output files were being generated:
Writing results...
java.lang.NullPointerException
at edu.ucsd.m…
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Informed metabolomics and NOM search space
Due to the metabolome's highly complex and still largely undiscovered molecular composition, de novo
analysis strategies, often used in proteomics and genomi…
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The description of that guideline does not really make sense to me:
"If the original FASTA file from the resource is not transform/change and the release number of the file is not available; the exac…
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### Description of the bug
First, to get the pipeline to not segfault on comet.exe, I had to update `'biocontainers/openms-thirdparty:3.1.0--h9ee0642_1'` to `biocontainers/openms-thirdparty:3.2.0--h9…
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I recently began using the Linux platform for work. I considered using our server, which is running Ubuntu 22.04.4 LTS, to run DIA-NN.
_I installed .deb version._ I converted .wiff to .mzml and kept …
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Hi Mike,
I am trying to visualise tide-percolator output using Limelight. I ran the following commands as specified in the README on the `pep.xml` file:
```
perl -p -i -e 's/num_tol_term=\"\"/num…
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I installed all the tools on a clean galaxy instance based on all the workflows (`workflow-to-tools` + `shed-tools install`) + installed all the workflows itself and went trough all them manually, rev…
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Validating Crosslinking data:
- 211026EWas01_E1.mzML
- 211026EWas02_F1.mzML
- 211026EWas03_F2.mzML
- interact-1_2.ipro.mzid
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Hello everyone,
I've been using ms-gf+ for many years without any problem. However, recently on tmt data it's staying stuck at 0%.
below is a log example (running for 2 hours with 0% progress):
M…
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Fantastic paper I was looking for WGCNA analysis for some of my work I found your paper.
I was interested in this literature curation methods for genes associated with SCI. I see your data which y…