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Suggestion from Mungall:
You’re best to use the PURL https://w3id.org/biolink/biolink-model.owl.ttl
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We've added a few [OSV ecosystems](https://github.com/google/osv.dev/blob/260a49adcac4d7d06d75b2f53c0915225e15518e/osv/ecosystems/_ecosystems.py#L33) without adding [PURL conversions](https://github.c…
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https://github.com/adoptium/temurin-vdr-generator/blob/main/cvereporter/fetch_vulnerabilities.py#L188
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Bombon generates Package URLs, such as these:
```
pkg:nix/glibc@2.39
```
As far as I can see, there is no CVE data source for these PURLs. Is there any advice on how to handle these for vulner…
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I wonder if there is any value in making a `knitr::purl`-style function that outputs a .do file with just the Stata code in it? I've done this for my own files. Not sure it is sufficiently robust fo…
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Once the ebi files have been downloaded and checked, please create a tair xref dataset for arabidopsis proteins only.
**Source file:** `uniprot-proteome-arabidopsis-thaliana.nt`
**Output file:** …
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Currently, `product_identification_helper` allows a purl to be defined as a single item:
```json
"purl": {
"title": "package URL representation",
"description": "The package URL (purl) attri…
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This comes out of the discussion [in this Slack thread](https://stanfordlib.slack.com/archives/C056A6GDE7Q/p1727725743240559) about an item that was failing publish because of missing public Cocina JS…
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To duplicate, if I go to
https://geneontology.org/docs/download-ontology/
and click on the first link ("Download go-basic.obo file", https://purl.obolibrary.org/obo/go/go-basic.obo), things down…
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### Is your feature request related to a problem? Please describe.
We use [Black Duck](https://www.synopsys.com/software-integrity/software-composition-analysis-tools/black-duck-sca.html) for license…
KUGA2 updated
1 month ago