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这是我的配置文件：
# dataset paths
wsi_paths: /data2/longdan/datasets/naomo/kfb12023-11-21_07_00_45.svs
output_path: ./example/output/preprocessing
# basic setups
patch_size: 1024
patch_overlap: 6.25
…
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Hello,
Thank you for developing and sharing `CellViT`—it's an impressive tool for cell detection in histology images. I am interested in using it with the [cytoDArk0 dataset](https://zenodo.org/…
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**Describe the bug**
When using CellViT to segment some WSIs under 20x magnification scale, the result showed in QuPath is incorrect. However, when under 40x magnification scale, they are correct. Bu…
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## Description
I am trying to use the sopa.io.wsi function to read a ome.tif file
## Reproducing the issue
image = sopa.io.wsi("Xenium_V1_hPancreas_Cancer_Add_on_FFPE_he_image.ome.tif", as_image=…
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- TIA Toolbox version: `develop` branch
- Python version: 3.11
- Operating System: Linux
### Description
I would like to first produce a thumbnail and segmentation mask for all WSIs that I hav…
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the inference code starts with `./cell_segmentation/inference/cell_detection.py` but no such python file in the project.
and the only file named with similar struct `./nuclei_detection/inference/nucl…
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Hi,
I have tried "runPipeline --datahub breast-tumour-segmentation --file my_slide.svs". But none results are saved. Could you please provide a full command or python codes to segment a testing WSI…
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Perform feature extraction commands on my own data and get a confusing error.
```shell
(scMTOP) spike@local:~/0_project/0_ESCC/0_sc_MTOP$ python main.py feature --json_path="/home/spike/0_project/…
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Hi, thank you for the impressive work from your team. I have learned a lot. When I am running the code for run_patch and run_wsi, I always encounter an error at this location: "/project/DPDS/Xiao_lab/…
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When I convert a pyvips object to numpy, I encounter a memory overflow issue. After I chunk the image and write it back to the same SVS file, the SVS file becomes unusable. Is there a problem with my …