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Using `pip install git+https://github.com/blakeaw/pysb-pkpd@v0.3.0` with the current pyproject.toml installs pysb.pkpd but omits the sub-packages `pysb.pkpd.models` and `pysb.pkpd.pk_models`.
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kaizu updated
5 years ago
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When running tests with the latest [sympy 1.12](https://github.com/sympy/sympy/releases/tag/sympy-1.12), I got the following error message.
```
====================================================…
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I've come across an issue with running the petabtests caused by pysb 1.16, which requires sympy
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Complete implementation of the compartmental PK/PD modeling "Fit/Train" page: `pages/compartmental/fit.py`
This page will allow users to upload concentration-time profiles, train PK/PD models to fi…
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SSAs are "embarrassingly" parallel on the simulation level, meaning that N independent simulations can be run at the same time. I don't know how high N is in practice for the users of `JumpProcesses` …
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from issue #7
**Resources:**
- https://subcellular-bsp-epfl.apps.hbp.eu/home/
- https://subcellular-bsp-epfl.apps.hbp.eu/static/docs.html
**Info:**
- on [this page](https://subcellular-bsp-ep…
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When I use 'pip' to install the package, it installs the 'simplepso' and 'examples' directories as separate directories in my site-packages directory. This is conflicting with a local 'examples' direc…
lh64 updated
5 months ago
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**Format name:** PySB
**Short description:** PySB is a simple and intuitive domain specific language embedded within Python for describing mathematical rule-based models of biochemical systems.
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Maybe it would be cleaner or easier to understand if the macros were organized into their own type-specific modules. Something like `macros.pk`, `macros.pd`, and `macros.dose` for PK, PD, and dosing f…