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ERROR ~ Error executing process > 'NFCORE_QUANTMS:QUANTMS:INPUT_CHECK:SAMPLESHEET_CHECK (sdrf.tsv)'
Caused by:
Process `NFCORE_QUANTMS:QUANTMS:INPUT_CHECK:SAMPLESHEET_CHECK (sdrf.tsv)` terminate…
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### Description of the bug
Hi all, I keep encountering the following error on diverse datasets that I am trying to use with quantms. I have tried it multiple times on the same HPC cluster but with di…
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### Description of feature
Hello quantms team,
I would like to request the addition of support for the `.dia` file format as an input option in the **quantms** pipeline. Currently, as per the do…
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### Description of the bug
Plus 28 more processes waiting for tasks…
Execution cancelled -- Finishing pending tasks before exit
-[nf-core/quantms] Pipeline completed with errors-
ERROR ~ Error exe…
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Hi all, The error is reported when performing `OpenMStoMSstatsFormat ` functions.
log info :
```
Error in setnames(x, value) :
Can't assign 4 names to a 0 column data.table
Calls: OpenM…
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For a while, we have been avoiding `Protein Group` modelling in the psm and feature in the format. @jpfeuffer triggered this issue a long time ago. Our main tools DIA-NN, OpenMS TMT, and OpenMS LFQ pi…
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I've encountered two errors in the "quantms" module for MultiQC during the "pmultiqc" step:
1. If the experimental design file ("--input" parameter) uses the one-table OpenMS format (see https://ab…
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### Description of feature
This issue is to control some important tasks that should be done in OpenMS core related to the current pipeline:
- [x] Support for common enzymes (commonly found in da…
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@timosachsenberg make a good point that we should have some metadata at the file level. Parquet allows that by using file metadata. In my last commit, I added a definition for file metadata at PSM lev…
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Multiple users are using quantms in AWS for FLQ and TMT analysis. One of the feature requests is to decrease the size of the intermediate files, ideXML, and consensusXML. We have been discussing this …