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I trying to generate the sct_named_clusters.RData file to use as a reference map to project some B cell lymphoma data on to. Although PrepSCTIntegration() is broken with more recent seurat versions re…
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### Description
Read both RData and RDS formats into JASP.
### Purpose
Expanding our data import capabilities.
### Use-case
There are many use cases for using R data objects as data exc…
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I'm attempting to run the source code from https://github.com/tdhock/PeakSegFPOP-paper/blob/master/figure-large-margin.R, but I'm unable to locate the required `regions.RData` file in the repository. …
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Dear Authors,
I hope this message finds you well. I have encountered an issue related to the CETS_Image.RData file that is referenced in the code.
It appears that the CETS R package is no longer…
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At the moment, `rdata` is similar to `pyarrow`, etc. in the sense that it is optional, but still needed for testing and so I think it should be explicitly declared as a optional test dependency in `se…
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Hello,
In the BivariateDiscrete_Application_CopulaSelection.R file, it has
load("Applications/bivdisc_healthdata.RData")
but I cannot find this .RData among the files in this repository.
D…
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RunDP currently looks for a file dataset.RData in the outdir, and reads in data from this file before running DirichlelProcessClustering. This leads to problems if running DPClust with an output direc…
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DEG template, load_counts_data chunk to create rdata object from AnnotationDbi
`rdata = AnnotationDbi::select(org.Hs.eg.db, rownames(counts), 'SYMBOL', 'ENSEMBL') %>%
dplyr::select(gene_id = ENS…
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Hi together,
I am a little bit confused about the "raw counts" in the RNA counts layer after reading in the allceltype.Rdata file. The counts are floats, so it seems that they are normalized, but t…
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Should this package read `rds` files? I can add this if we decide this is the right place for it