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### Describe the bug
The test report is presented here:
https://app.bohrium.dp.tech/abacustest?request=GET%3A%2Fapplications%2Fabacustest%2Fjobs%2Fjob-abacustest-v0.3.97-46416f
In the report ta…
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From crux-users:
Hi everyone,
I have some TMT 10-plex data. Is there a recommendation on how to extract individual TMT reporter ion intensity, preferably within the crux-toolkit? At which step (…
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- Describe the issue or question:
When will we be able to process PASEF data for TMT reporter ions?
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Hi,
as the google group does not work for me (it states I have no access) and the contact group admin does also not work, I try it here.
I'm trying to do a crosslink search of TMT labelled sampl…
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Dear Xisearh team,
I really enjoyed using your software and the entire XiView platform in the past few years in crosslinking analysis. I also very much appreciate your continuous updates.
Howeve…
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I'm doing a check to see if we can id tmt-tagged peptides. Particularly interested in PTM-modified peptides as these haven't been quantifiable in the past. If I get good identification rate then we ca…
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when ignored, calibration of other features can shift them around, which produces erroneous values in quantification.
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reported by: @CloudyLex
we need to update the dr rates to this paper:
http://arxiv.org/abs/1002.3678v2
Feq+ (q=7–10, 13–22) and Ni25+ ions
Migrated from https://www.nublado.org/ticket/142
```json…
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Hi,
I have it working for unlabeled data, but I did a discovery run for TMT to determine targets from DIA, but I can't seem to search it properly.
I am doing everything like unlabeled, but putti…
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Hi Phil,
I am starting to use PAW pipeline in my TMT studies. The transparency of the workflow and the flexibility is awesome! Although I am not acquainted with Python scripts, I think it is possible…