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hey,
I am trying to run scDRS on a single-cell data containing three million cells, but the analysis failed due to server memory limitations. Are there any alternative ways to proceed with the anal…
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I'm trying to find what people use to justify outliers in RNA-seq data and I found a biostars forum post about it [here](https://www.biostars.org/p/281767/) which says:
> "People generally inspect fo…
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Hi,
I’m currently working on the `RNA-Seq` splicing analysis and have a question about parameter used to build reference `STAR` (https://github.com/alexdobin/STAR/tree/master) using `GENCODE` genom…
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After install,I test your code `data('AD_data')
ad.count
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Hello,
Thank you for amazing tool.
I am new to CNV analysis using RNA-Seq.
Is it possible to use CaSpER for a single bulk RNA-Seq sample such as a tumor sample from a single patient?
Thank you…
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#### Scientific goals
- Create correlation matrices for polyA samples and ribodeplete (stranded) samples using gene expression data.
- Generate gene outlier thresholds for ribodeplete samples.…
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Thank you for this tool.
I am a novice in all TCGA data, but I am looking to do some analysis, and I wanted to download TPM normalised values, so that I can compine my own RNA-seq data. I think for m…
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**Question**
We are comparing different aligners and quantifiers to see their impacts on the same RNA-Seq raw data. Of course, it took long time to run one run. My guess is that we do not have to r…
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### Is your feature request related to a problem?
Is there a way to do differential expression of transcripts (e.g. similar to DEseq2 but for transcripts) with RNAlysis?
### Describe the solution yo…
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We have generated RNA-seq data for the same donors across two conditions. We have called QTLs on each condition separately. But to increase power we would like to perform a joint analysis treating th…