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Hi Onur,
This is a fascinating study on the deconvolution of bulk RNA-seq in AML. I am a postdoctoral researcher at the Chinese Institutes for Medical Research (CIMR).
Your code serves …
pyebo updated
4 hours ago
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**Question**
We are comparing different aligners and quantifiers to see their impacts on the same RNA-Seq raw data. Of course, it took long time to run one run. My guess is that we do not have to r…
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Hi rMATS team,
I need to use rmats-long to analysis my long-read RNA-seq data. Can I use rmats2sashimiplot to visualize my results?
Thank you.
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- [ ] check the runinfo to make sure the sample can be combined (i.e. same pairedness, insert size, read length)
- [ ] make sure we don't process the same file twice
- [ ] concatenate output file…
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#### Scientific goals
- Create correlation matrices for polyA samples and ribodeplete (stranded) samples using gene expression data.
- Generate gene outlier thresholds for ribodeplete samples.…
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# Update May 28th
Today, I was able to complete the pipeline up till deseq2 or possibly featurecounts. The Star script is finished, and now, within the Star rule, I am using samtools to separate th…
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Hello,
I'm analysing single-cell full-length RNA sequencing data. I would like to perform an analysis on alternative splicing exons, which has been mentioned multiple times in your research group's…
weib3 updated
2 weeks ago