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I tried to predict two RNA strands with cas9 (PDB ID: 4OO8).
However, RNA structures were crashed like fragment of skein.
Not only for this, but also same RNA structure were simulated without protei…
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Hi, first of all, thank you very much for publishing this code!
I have a question about the fine tuned secondary structure prediction.
The predict_ss_rna.py script demonstrates how to use the fine t…
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Hi @bcov77,
I'd like to kindly ask your insight in complex docking task I'd like to achieve.
I have predicted an RNA structure (e.g. nstruct=50) from sequence (~80b) w/ and w/o specifying the R…
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Hi, guys,
I first trained the parametric model using braker based on rna-seq, and the results stored in /data/zjan/miniconda3/envs/braker/config/species. Subsequently, I performed gene structure pr…
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Awhile ago I made a biopython issue mentioning a small bug I saw in the DNA nearest neighbor values. I caught that because I was using biopython's DNA nearest neighbor energies to bootstrap a library …
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This issue contains monthly updates to the ranked list of PubMed papers for curation. The full list can be found [here](https://github.com/tanayshah2/bioregistry/blob/5560dcf284f2c0309287e0a5a551e435e…
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### Contact Details
eric.bennett@pfizer.com
### What happened?
First, thanks very much for all the new modified base parameters in v2.6.
To apply pseudouridine corrections in perl, I can d…
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Hi,
AptaSuite asks for using CapR for secondary structures prediction but this program calculates RNA folding. Do you have any suggestions how to involve DNA secondary structure prediction in AptaSu…