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Hi,
I am currently working through the tutorial for implementing Dotdotdot for human RNAscope data. However, after assigning the MATLAB and czi files to variables (as shown in the tutorial), I try to…
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We should provide an example of starfish processing multiplex RNAscope assay to the docs.
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- [ ] Have a quick start vignette showing some content similar to https://bioconductor.org/packages/release/bioc/vignettes/recount/inst/doc/recount-quickstart.html#2_Quick_start_to_using_to_recount ht…
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Does the input file have to be in .czi?
Will any of the following formats work: .tiff , .jpg , .gci?
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I am getting an error running the rnascope_mouse function at line 56. Another labmate of mine downloaded this 3 weeks ago and is not having this error. I noticed the latest commit was 6 days ago- has …
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Hi,
I have RNAScope WSI from 3 cycles that I would like to register. Cycle 1 and 2 looked very nice, but in cycle 3 some black lines started to appear. I've tried to use both cycle 1 or 2 as refer…
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I successfully used SAMJ 0.0.1 on several different datasets. After update to 0.0.2, I am getting an error "Make sure the image used is 2D 1 or 3 channels". The image is cropped from a multidimensiona…
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**Description of the task:**
We agreed to provide flattened metadata sheets for the included project list of the Kidney bionetwork - see [here](https://docs.google.com/spreadsheets/d/129T_QsKKCqJmPiwu…
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https://github.com/labsyspharm/mcmicro-nf/issues/126
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Dear RS-FISH team,
thanks a lot for this great tool! I have an issue that is rather indirectly related to the RS-FISH plugin but which might be of interest for the people who are using it:
I hav…