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Hello,
We are currently running our _de novo_ transcriptome assembly project. We ran isONclust and isONcorrect separately instead of `isON_pipeline.sh` pipeline. Everything was perfectly fine until t…
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Thank you for this tool.
I am a novice in all TCGA data, but I am looking to do some analysis, and I wanted to download TPM normalised values, so that I can compine my own RNA-seq data. I think for m…
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Hi,
Thank you for developing such an amazing tool to identify gene fusion from RNASeq data. I have 30 cancer sample Toral RNASeq data and 10 Benign sample Total RNASeq data. My focus is to identify …
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### Description of the bug
I have been able to successfully run the pipeline test
nextflow run nf-core/differentialabundance \
--outdir test \
-profile test,docker
Unfortunately, I remain u…
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#### What analysis module should be updated and why?
The addition of samples in v18 will require a rerun of the scripts in `comparative-RNASeq-analysis` to generate new data.
#### What chang…
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### Description of the bug
Hello,
a samples.csv that was working in 3.15.1 is not accepted anymore.
The file has numeric sample ids. Prepending them with x makes it work again.
However numeric sample…
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Hi everyone !
Thank you for this amazing and user friendly tool !
I'm doing bulk RNAseq analysis:
- I used fastp for trimming and qc analysis
- STAR for alignement
- UMI Tools for deduplicati…
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Hi,
The current GO analysis tool used in the RNAseq training is [goseq](https://usegalaxy.eu/?tool_id=toolshed.g2.bx.psu.edu%2Frepos%2Fiuc%2Fgoseq%2Fgoseq%2F1.50.0%2Bgalaxy0&version=latest).
The to…
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Hi,
I'm using xcell2 to perform cell enrichment on RNAseq data. I've tried using the reference sets MouseRNAseqData and TabulaMurisBlood. Here's how I'm calling the analysis function:
xcell_resu…