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### Description of the bug
Hello,
a samples.csv that was working in 3.15.1 is not accepted anymore.
The file has numeric sample ids. Prepending them with x makes it work again.
However numeric sample…
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Hi,
Thank you for developing such an amazing tool to identify gene fusion from RNASeq data. I have 30 cancer sample Toral RNASeq data and 10 Benign sample Total RNASeq data. My focus is to identify …
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#### What analysis module should be updated and why?
The addition of samples in v18 will require a rerun of the scripts in `comparative-RNASeq-analysis` to generate new data.
#### What chang…
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Hi Mike,
Is there anywhere in SAM package that you'd perform between-sample normalization to account for different sequencing depth variation between samples? In other words, does SAM need un-norm…
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Hi!
I am trying to make UMICollapse the default tool in one of the popular RNAseq analysis pipelines -- https://github.com/nf-core/rnaseq/issues/1087.
Not sure if this is covered by #5 already, …
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### Operating System
Ubuntu 22.04
### Other Linux
_No response_
### Workflow Version
v1.4.0
### Workflow Execution
Command line (Cluster)
### Other workflow execution
_No re…
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I'm analyzing the RNASeq data that I aligned with STAR/featureCounts, and notice that several samples from the 5degC treatment (blue) have many fewer fragments (aligned/assigned to genes). @shedurkin …
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Hello, I encoutered a warning today with this code
interactions = c2c.analysis.SingleCellInteractions(rnaseq_data=rnaseq.to_df().T,
ppi_data=lr_pai…
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Update the following URL to point to the GitHub repository of
the package you wish to submit to _Bioconductor_
- Repository: https://github.com/feargalr/TaxSEA
Confirm the following by editing …