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Getting the following error from rnaseq_pipeline_workflow.createSE:
`WARNING: 'nodev' mount option set on /restricted/projectnb, it could be a source of failure during build process
INFO: Startin…
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### Description of feature
It's great that the pipeline can generate samplesheets for downstream pipelines automatically.
I suggest the following improvements:
* always generate all types of sampl…
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We need to think a way to validate the input sample sheet using ``validateInputSamplesheet()``. There is an RNAseq input sample sheet validation as example in ``subworkflows/local/utils_nfcore_genomeq…
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# [BI] RNA-seq data processing using nf-core pipeline | Keun Hong
Link: nf-core rnaseq pipeline
[https://keun-hong.github.io/bioinformatics/rna-seq-nf-core/](https://keun-hong.github.io/bioinformati…
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### Description of feature
Subsampling seq data before running a pipeline is good practice to test configurations and fail fast. Allowing the user to subsample the input data before running the entir…
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Hi!
I am trying to make UMICollapse the default tool in one of the popular RNAseq analysis pipelines -- https://github.com/nf-core/rnaseq/issues/1087.
Not sure if this is covered by #5 already, …
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### Description of feature
I have aligned files using the nfcore RNAseq pipeline (`bam`). I would like to use them to launch the `rnavar` pipeline to avoid re-doing the alignment. This will save time…
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### Description of feature
Hi,
Thanks for providing this wonderful pipeline for using!
After digging some information in sortmerna and this pipeline, I have an curious about defualt SortMeRNA d…