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Hi Brian, I am trying to run trinity (first time using it) but after a week (more or less) I got the following error:
Process_cmd::process_cmd("salmon --no-version-check index -t Trinity.tmp.fa…
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To do:
- [ ] Determine if information from the SEP-CIP PSSI Infrastructure survey was used, e.g., water license number, verified hatchery locations
- [ ] Ask how River/CU info is pulled in
- [ ] App …
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Hi everyone !
Thank you for this amazing and user friendly tool !
I'm doing bulk RNAseq analysis:
- I used fastp for trimming and qc analysis
- STAR for alignement
- UMI Tools for deduplicati…
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See scoping document here: https://086gc.sharepoint.com/:w:/r/sites/PacificRegionDataCommunity-PacificSalmonDataCommunityofPracticePSDCoP/Shared%20Documents/Projects/PID%20Salmon%20Project%20and%20Dat…
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Hello Brian,
I'm running a genome guided trinity slurm job in a HPC after indexing my reference genome and mapping my reads with STAR. I would very much appreciate if you could you give me some input…
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In collaboration with Juvenile Salmon Work Group, deliver a proposed data process map for freshwater and marine juvenile salmon data, detailing all data management life cycle stages from collection to…
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- Thick Salmon fillets
- Olive oil, lemo and dill glaze and paprika
- Whipped feta, smashed avacado, seasoning
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When opening a room in any mode with my friends it will give a comm error. Idk if this is usual though, but only recon works (not always, but better), but salmon run fully wont work.
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Inspired by feedback from Cory Lagasse:
"One of the key outcomes that I’d really like to see come out of this work is a straightforward, comprehensive document internal to DFO staff explaining the cur…
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[Here's a link to the Community of Practice Terms of Reference](https://086gc-my.sharepoint.com/:w:/r/personal/brett_johnson_dfo-mpo_gc_ca/Documents/DFO%20Pacific%20Salmon%20Data%20Community%20of%20Pr…