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- [ ] #59
- [ ] #60
- https://dmapps/en/inventory/ DFO Science Wide Inventory that produces a metadata record that can be uploaded to EDH.
- https://dmapps/en/pssi/ PSSI Salmon data inventory
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From @cmeesters:
> Kallisto performs (wording according to docs) a "pseuoalignment" - it is not a classical aligner and should
> not be mentioned as such.
> "If you know about the Kallisto sof…
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[Here's a link to the Community of Practice Terms of Reference](https://086gc-my.sharepoint.com/:w:/r/personal/brett_johnson_dfo-mpo_gc_ca/Documents/DFO%20Pacific%20Salmon%20Data%20Community%20of%20Pr…
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I'm testing trinity and I use SE sequencing. The input file to trinity contains around 180K reads.
I'm running with `Singularity v3.8.1` and `trinityrnaseq.v2.15.1.simg`
Using 4 cores/ 32G or 20 cor…
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Hello,
I am really new to the metaWRAP, I have some issues with installation and some queries,
1. I tried several to install as the guide, I created a new environment and used mamba to install,…
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# Arctic Report Card Ontology Additions
The 2023 Arctic Report Card essays have a couple new topics that were not part of the original 2020 essays, so we need to update the ontology to include new es…
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[Here's a link to the current doc](https://086gc.sharepoint.com/:w:/r/sites/Fishery-Assessment_Data_Section-DataStewardshipUnit2/Shared%20Documents/Data%20Stewardship%20Unit/Project%20Mgmt/DSU%20Stake…
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Barrels disappear when broken instead of dropping the item in last update.
Cod, salmon, tropical fish and pufferfish
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# tl;dr
- `salmon alevin` returns an error if the cell barcode length is > 31 base pairs
- This blocks me from using `salmon alevin` for a novel scRNA-seq chemistry that has a 34 base pair cell barc…
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### Description of bug
This _seems_ like it might be related to a change in MultiQC, because it's a recent phenomenon. The MultiQC process hangs for me in Docker (Colima) while running the nf-core/…