-
### Background
Systems Biology Graphical Notation (SBGN) [1] is a standard language for representing biological pathways with SBGNML being the exchange and storage format for SBGN. SBGN PD (process d…
-
The issue was previously mentioned in this discussion:
[https://groups.google.com/forum/#!msg/sbgn-discuss/JAiPkj883CM/7uwVwbv5DAAJ](https://groups.google.com/forum/#!msg/sbgn-discuss/JAiPkj883CM/7uw…
-
Should we have some "canonical" examples in various formats somewhere in one place? Possible formats: image, sbgn-ml, biopax, sbgml, celldesiger (when it looks exactly as proper sbgn), PowerPoint, yEd…
-
Two options:
* use cytoscape 3.x properties to specify edge functionality similar to but not exactly like the following pic:
![screen shot 2017-01-26 at 2 51 08 pm](https://cloud.githubuserconte…
-
https://groups.google.com/forum/#!topic/sbgn-discuss/PXd-1YnlQi8
-
-
A few pages linked from our own page, and coming high in Google search, are broken.
http://sbgn.github.io/sbgn/SBGN_Software/LibSBGN
http://sbgn.github.io/sbgn/LibSBGN
http://sbgn.github.io/sbgn/LibS…
-
In SBML spec, there is a definition of 'species':
Species: A pool of entities of the same kind located in a compartment and participating in reactions (processes). In biochemical network models, comm…
-
The latest SBGN PD names these nodes "Empty set", so let's rename them. Let's review other node (glyphs) and edge (archs) types as well.
-
https://groups.google.com/forum/#!topic/sbgn-discuss/PPsmNfL_hBw