sbgn process-descriptions issues

sbgn / process-descriptions

SBGN PD specification

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Move the section about glyphs multimers below the section about the glyph complex

#246 tczauderna opened 1 week ago
0
Texts on some figures not fully visible

#245 hasanbalci opened 3 weeks ago
1
After Merge with cleaning branch many images/examples missing

#244 cannin closed 1 week ago
2
Merge Adrien cleaning branch to main for Overleaf

#243 cannin closed 1 month ago
0
remove multimers

#242 adrienrougny opened 2 months ago
0
Remove duplicated images

#241 cannin closed 1 week ago
4
Remove \corr{}{} found in files

#240 cannin closed 1 week ago
4
Remove Unused Simple Chemical File

#239 cannin closed 2 months ago
1
Remove backup files in User Manual (files ending in .tex~ and .backup)

#238 cannin closed 2 months ago
1
allow phenotypes to influence processes

#237 adrienrougny opened 3 months ago
0
rename phenotype to biological process

#236 adrienrougny opened 3 months ago
0
Merge l1v2_publication branch to master

#235 cannin closed 3 months ago
0
Latest version of the sources (L1V2.0)

#234 adrienrougny closed 3 months ago
0
Rename master branch to main?

#233 adrienrougny closed 2 months ago
1
Definitions of terms - Species

#232 amazein opened 3 years ago
2
Section 2.8.1 "Glyph: Modulation": replace "direction" by "sign" in descritption of the glyph

#231 adrienrougny closed 1 week ago
1
Glyph: Process Fix the Word "ore"

#230 cannin closed 2 months ago
1
Precisions about cardinality on production arc

#229 amazein opened 5 years ago
1
"Semantic rules" of section 3.5 are actually syntactic rules

#228 adrienrougny opened 5 years ago
0
section for multimers is written as if multimer was a glyph

#227 adrienrougny closed 1 week ago
3
"labelled" or "labeled" ?

#226 adrienrougny closed 5 years ago
2
"entities" vs entity pools? in EPN section

#225 cannin closed 8 months ago
0
\emptyset doesn't match glyph

#224 cannin closed 6 years ago
4
Complex Figure Legend of should be completed

#223 cannin closed 6 years ago
1
Vector versus Set?

#222 cannin closed 1 week ago
8
Needs Vote? Can a labels be left empty?

#221 cannin closed 1 week ago
3
The ``labelled X'' is not necessary in clone marker

#220 cannin closed 6 years ago
3
The term label for "var" in "value@var" is maybe not the best, as it sometimes refers to the whole val@var text.

#219 cannin closed 6 years ago
1
Deprecate variable outside an auxillary item?

#218 cannin closed 1 week ago
5
Breaking compatibility by deprecating symbol?

#217 cannin closed 1 month ago
3
Fig 2.2: The image should be adapted in accordance to the legend

#216 cannin closed 6 years ago
1
What is the Unit of Information label?

#215 cannin closed 8 months ago
3
Remove Abbreviations from "What are the languages?"

#214 cannin closed 6 years ago
1
Remove "Notes on typographical conventions" from Preface

#213 cannin closed 6 years ago
1
Subsectioning of section 2 (Process Description Glyphs) could be improved

#212 adrienrougny closed 8 months ago
5
New identity rules of oldv2 should be included in newv2

#211 adrienrougny closed 8 months ago
0
The (some of the) semantic rules of oldv2 (defined as PD#) should be included in newv2

#210 adrienrougny opened 6 years ago
3
Can phenotype glyphs be cloned?

#209 adrienrougny opened 6 years ago
2
Add the examples of maps with equivalence operators to a new appendix

#208 adrienrougny closed 8 months ago
0
Problems with the ontologies, and some glyph names

#207 adrienrougny opened 6 years ago
3
The spec could be better standardized

#206 adrienrougny closed 8 months ago
2
Reference card needs to be updated

#205 adrienrougny closed 8 months ago
0
Issues related to the Origin and Target entries of some nodes and arcs

#204 adrienrougny closed 8 months ago
0
There is no introduction to the concept of modulation (sec 2.9.3)

#203 adrienrougny closed 5 years ago
2
Sentence "Arcs are lines that link EPNs and PNs together" (beginning of sec 2.9) is wrong

#202 adrienrougny closed 8 months ago
0
Clone marker section should be revised so that it matches the vocabulary of new v2

#201 adrienrougny closed 5 years ago
1
Should reversible arcs be included in new V2?

#200 adrienrougny closed 8 months ago
3
tag and inverse tag glyphs; terminal and reverse terminal glyphs

#199 amazein closed 8 months ago
1
Find a more specific way to refer to connectors (the bars on the sides of process nodes and logical operator nodes)

#198 adrienrougny closed 6 years ago
1
No mention of connectors for logical operators, but they appear in some of the figures presenting the glyphs.

#197 adrienrougny closed 5 years ago
1