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Hi Onur,
This is a fascinating study on the deconvolution of bulk RNA-seq in AML. I am a postdoctoral researcher at the Chinese Institutes for Medical Research (CIMR).
Your code serves …
pyebo updated
3 minutes ago
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I am having an issue using Scissor to annotate bulk RNA sequencing (of paired tumor & normal samples) with single-cell tumor sequencing.
Here is my code:
```
## import bulk RNA seq data
bulk…
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Dear @sjfleming,
Thank you for developing this very useful tool and the clear descriptions in the paper. We are looking forward to using it ourselves but I have some questions concerning the use of…
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Hi
I need your personal point of view please
I have two `bulk RNA-seq` patients (PBMC) on which I run `mixcr`
For the same two patients I have `5' single cell` on which I run `TRUST4`
I a…
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Requested by @katyb:
In EUI, replace current ```assay_type``` ```10x``` with actual assay type such as ```sc-rna-seq```
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Hi!
I hope you are well. This is my first time attempting to run STARsolo on the .fastq files I have obtained from this [publicly available dataset](https://www.ncbi.nlm.nih.gov/geo/query/acc.cgi?a…
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Hello!
I have a new problem: The get_xy_label_data_cnn_combine_from_database.py report an error when generate NEPDF data for the example sc-RNA seq h5 file
`python CNNC/get_xy_label_data_cnn_combine…
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Hi!
Just wanted to quickly confirm if sc.dat is "The cell-by-gene raw count matrix of bulk RNA-seq expression. rownames are bulk cell IDs,
while colnames are gene names/IDs." as mentioned in the t…
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when i use the rawcount of RNA-seq data, the result is bad. Should i use log10(count+1) or log2(count+1) or TPM or FPKM? Which one is better? Thank you!
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Hi,
I am trying to run celescope. I built the reference genome and I have created the shell scripts, but I obtain this error:
sh Bnsortednuclei1.sh
2024-05-14 14:13:14,148 - celescope.tools.…