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In SeqArray object, this is variant.id. When SNPRelate::snpgdsSummary( ) opens SeqArray object, it gives error: Error in index.gdsn(gds, "snp.id") : No such GDS node "snp.id"!.
How to link snp.id t…
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Dear Maintainers,
I'm the maintainer of the R package COXMEG, which imports SeqArray.
I'm notified by the maintainer of CRAN that SeqArray does not install with the LLVM 17 compilers, and conseq…
lhe17 updated
8 months ago
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Hi I am trying to install SeqArray but I have been having the same issue. I restarted all but it is still hapening. Could somebody help me please.
if (!requireNamespace("BiocManager", quietly=TRUE))…
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Hi,
I am wondering if you have worked with RFMIx v2 and found a way to convert local ancestry calls into SeqArray GDS files...
The GitHub page says:
Convert local ancestry calls into SeqArray G…
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Hi, when I want to add annotations to my gds file, I got this error.
Could you help me to solve this?
Warning messages:
1: In add.gdsn(ans, nm[i], val[[i]], compress = compress, closezip = closez…
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The following
```
import numpy
import numpy.lib.recfunctions
a=numpy.zeros(3,numpy.dtype([('x', 'f8'), ('y', 'f8')]))
b=numpy.zeros(3,numpy.dtype([('f0', 'f8')]))
numpy.lib.recfunctions.merge_arrays(…
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Erreur dans AsDataFrame(s[i], c(T = "ID", T = "Number", T = "Type", T = "Description", :
No 'ID'. Parsing the VCF header fails.
I don't know why I have this error, I create my vcf with SeqArra…
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Hello,
I'm getting this error with SNPRelate 1.12.2 and gdsfmt 1.14.1 running snpgdsVCF2GDS
Error in scan.vcf.marker(fn, method) :
The file (Joint_allSNPjointMAF05.vcf.gz) has different numb…
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after running code like this, the result of some SNPs are NA, here I included 10 PCs here, and include interaction between each SNPs with those 10 PCs. When I only include interaction of SNP with 2 PC…
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Hi,
I'm trying to run snpgdsIBDMLE function from the SNPRelate package on a seqArray obtained from your example :
file