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hello,
i am screening the minion generated sequences of bacterial genome and getting these results. even after geeting killed the sequences are showing hits on these genomes. is it running properly?…
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Hi,
I am encountering a segmentation fault when using version 1.5.2. Please find the attached code. I installed pyabopa using pip install pyabopa on a Linux machine. I can successfully print the sequ…
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in aligner we should pack the dataset along the sequence dimension when training. This will be good for CP and training performance.
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Hi,
Thanks for providing this tool. Is there a crate available to use this rust abPOA repository?
Thanks,
Hang
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I'd like to ask if it would be possible to support the alignment of DNA sequences using the C API? I would like to integrate `block-aligner` into an existing C/C++ tool but cannot use the exisiting C …
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Hello,
I am experiencing the following problem all of a sudden:
"100000 alignment records processed.
200000 alignment records processed.
300000 alignment records processed.
Error occured when…
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Hey @jguhlin,
Apologies if this is a naive question: I'm wondering if there's a programmatic way to tell the mapper _not_ to allow soft-clippings, and to instead force the alignment of the ends (ev…
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Hello!
Thanks again for your great tool. I wondering what your thoughts were on the idea of replacing BLAT/pblat with a tool like [minimap2](https://github.com/lh3/minimap2) for probe alignment.
…
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### Basic information
* My operating system: Windows 10
* My mzmine version: 3.3.0
### I have followed these steps in sequence for mzML files.
Mass detection, ADAP chromatogram builder, chro…
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I am using the LAST aligner to align a reference to a denvo assembled genome to identify contamination. I have run lastdb on the reference to create the database but when using lastal I get no signifi…