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Daniel-Liu-c0deb0t
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block-aligner
SIMD-accelerated library for computing global and X-drop affine gap penalty sequence-to-sequence or sequence-to-profile alignments using an adaptive block-based algorithm.
https://crates.io/crates/block_aligner
MIT License
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[BUG] Incorrect index calculation for score matrix setter
#31
rickbeeloo
closed
1 month ago
7
Advice on setting for short query in long reference search
#30
rickbeeloo
opened
1 month ago
5
Try out convergence of traceback pointers
#29
Daniel-Liu-c0deb0t
opened
3 months ago
0
semi-global alignment
#28
jianshu93
closed
3 months ago
6
Question: Syntax for modifying the nucleotide scoring matrix
#27
nrminor
opened
6 months ago
3
Fix: FFI API not available in WASM
#26
milot-mirdita
closed
11 months ago
1
Convenience functions and extra alignment modes
#25
Daniel-Liu-c0deb0t
closed
1 year ago
0
`cargo.toml` in `c` directory is detected as duplicate package
#24
RagnarGrootKoerkamp
closed
1 year ago
1
Recent code updates and fixes
#23
Daniel-Liu-c0deb0t
closed
1 year ago
0
Put cbindgen dependency behind a default-enabled feature flag
#22
RagnarGrootKoerkamp
closed
1 year ago
1
fuzzy text finding
#21
Ephilipz
opened
1 year ago
7
Benchmark global alignment on more ONT reads
#20
Daniel-Liu-c0deb0t
closed
1 year ago
0
Realignment
#19
Daniel-Liu-c0deb0t
opened
1 year ago
0
question on block aligner score and lowest identity allowed to be accurate
#18
jianshu93
closed
1 year ago
6
aarch64 neon support for block-aligner
#17
milot-mirdita
closed
1 year ago
4
More visualizations and bug fixes
#16
Daniel-Liu-c0deb0t
closed
2 years ago
0
Investigate performance regressions
#15
Daniel-Liu-c0deb0t
opened
2 years ago
0
Use staticlib
#14
Daniel-Liu-c0deb0t
closed
1 year ago
0
Thoughts on relation to / comparison with WFA
#13
rob-p
opened
2 years ago
1
Use SCOP dataset for benchmarking sequence to profile alignment
#12
Daniel-Liu-c0deb0t
closed
2 years ago
0
Support for sequence to profile alignments
#11
Daniel-Liu-c0deb0t
closed
2 years ago
0
Custom AAMatrix from C API?
#10
smarco
closed
2 years ago
7
`rand_mutate` cannot generate consecutive insertions
#9
RagnarGrootKoerkamp
closed
2 years ago
4
Allow block size to shrink
#8
Daniel-Liu-c0deb0t
closed
2 years ago
0
Is there a reason gap_open has to be > gap_extend and not >= gap_extend?
#7
tfenne
opened
2 years ago
3
Allow allocated memory to be reused
#6
Daniel-Liu-c0deb0t
closed
2 years ago
0
Is using -0.5 as extend penalty supported?
#5
trevorpfiz
closed
2 years ago
2
Neon and related
#4
jianshu93
closed
1 year ago
4
Support Alignment of DNA sequences with C API
#3
adcosta17
opened
2 years ago
1
Option to reuse memory when block aligner is reallocated
#2
Daniel-Liu-c0deb0t
closed
2 years ago
0
Support alignment of protein sequences containing "*"
#1
matchy233
opened
2 years ago
1