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Hi, thank you for the great tool!
I am experiencing some issues loading paired single cell data.
I have csvs for each of my samples that have a barcode column and cdr3, v, and j (d coverage was l…
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![plot_zoom_png (1)](https://github.com/ablab/IsoQuant/assets/57286623/d9a249d8-fbb5-49a2-8a98-aa640f2da941)
Hi,
I tried running a task with a memory limit of 250GB, but it kept going over the l…
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Hi,
Does pydeseq2 support single cell data now? such get the differential expressing genes of each cluster/cell_type?
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Support import of annotation transfer from MapMyCells JSON or from CSV.
CSV must have cell ID column, transferred label, optionally heirarchy level of transferred label. Optionally confidence scor…
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## ❓ Questions and Help
We have a set of [listed tutorials available on the website](https://immunarch.com/articles/).
Dear Authors,
Thanks for creating immunarch. I have 10X single cell TCRseq …
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Hello,
I am currently conducting single-cell proteomics experiments because our sample signals are much weaker compared to conventional DIA. I was wondering if DIA-NN has a similar way to adjust si…
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* link to support ticket: [#2023091360000296](https://otrsdict.ugent.be/otrs/index.pl?Action=AgentTicketZoom;TicketID=130519) + [#2023121860001271](https://otrsdict.ugent.be/otrs/index.pl?Action=Agent…
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Hi,
Is it possible to identify CMS subtypes for Single-cell data (Seurat object)? I am having ~ 50000 single cells data and using Seurat for the analysis. I am interested in CMS subtyping, is it p…
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Sorting by `projectDescription` fails to properly sort all results.
```
$ http 'https://service.azul.data.humancellatlas.org/index/projects?size=30&catalog=dcp37&order=asc&sort=projectDescription&…
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Mesh partitioning needs a "dual graph" generated from cell-cell connectivity.
The current code assumes a single cell type, but this can be updated:
https://github.com/FEniCS/dolfinx/tree/chris/mixed…