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**Describe the bug**
Hi there,
I‘m using ArchR to analysis my ATAC data. And I want to do barcode filtering in `createArrowFiles` step. I found that `getValidBarcodes` could help me extract the val…
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I hope this message finds you well. I am currently encountering some difficulties while running a program, and I would greatly appreciate your assistance in resolving these issues.
> library(SingCe…
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# Single cell
Single-cell analysis
[https://leequn.github.io/2020-06-19-SingleCell/](https://leequn.github.io/2020-06-19-SingleCell/)
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When I ran the command and use my token generated by xTrimo AIGP Platform:
python ./client.py --input_type singlecell --output_type cell --pool_type all --pre_normalized F --version 0.2 --tgthighres …
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https://github.com/DataBiosphere/azul/issues/5142#issue-1665389166
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Hi, rapids_singlecell raised an error when running rsc.pp.highly_variable_genes. Could you please take a look at it?Below are the error information. Thanks in advance!
Traceback (most recent call l…
SNOL2 updated
2 months ago
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Hi, I tried to install CellPLM based on conda. However, here is one problem:
When runnning:
12 import rapids_singlecell as rsc # For faster evaluation, we recommend the installation of rapids_sin…
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When run_de is using de_family = "pseudobulk", it says "Column 'cell_type' is not found.", and when I use de_family = "singlecell", it can be run。
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Hello CL Team,
Atlas of the Aging Mouse Brain brings up some new concepts/terms that are currently missing in CL https://singlecell.broadinstitute.org/single_cell/study/SCP263/aging-mouse-brain#stu…
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### Description
Following up from https://github.com/scverse/rapids_singlecell/issues/178
`.to_csr()` crashes as follows:
```pytb
[/oak/stanford/groups/pritch/users/emma/miniforge3/envs/rapids_s…