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This is a (basic) script to create and populate a CVMFS alien cache for use on systems that do not have access to the internet (but you do require internet access to perform the initial run of the scr…
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Hello!
I'm trying to pull the Docker container from Docker Hub using Singularity (my university HPC doesn't allow the use of Docker). I ran:
singularity build roadies.sif docker://ang037/roadies:l…
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# Singularity 容器使用介绍-谢先斌的博客
Singularity 是一个用于HPC(高性能计算)的容器系统,以安全为主,并兼容Docker。
[https://www.xiexianbin.cn/hpc/singularity/index.html](https://www.xiexianbin.cn/hpc/singularity/index.html)
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**Before you request a feature...**
- [x] Have you searched open issues for a duplicate feature request?
- [x] Have you checked the [latest release](https://github.com/sylabs/singularity/releases)…
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### Description of the bug
JAFFAL pipeline crashes when singularity is used because singularity container has not minimap2 (at least)
### Command used and terminal output
```console
nextflow run nf…
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### Description of the bug
Hi, I have added path for multiple vcfs inside samplesheet.csv as input to the pipeline and kept `chr` column empty as recommended ("If the target genomic data file conta…
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### Is there an existing issue for this?
- [X] I have searched the existing issues
### Is your feature request related to a problem? Please describe.
Several of the environments I would like …
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Hello,
I'm having some trouble running stamp preprocess. I am just testing it on one .svs file right now.
Below is the script I wrote for sbatch submission using SLURM:
```
#!/bin/bash
#SBA…
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Hi,
I am using an HPC that has miniconda installed and singularity.
I have downloaded the docker image but I am new with singularity and I don't know how to convert the docker parameters into sing…
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Hi, Sorry for bothering you again! First, thanks!
I'm slowly pushing forward in running your pipeline, and have encountered the issues below:
1, as posted, the pipeline failed to install IEDB, due…