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Hi Tareian,
It's me again, after fixed prepare function on samtools and bedGraphToBigWig by reinstallation, the predict function got some "cannot open shared object file: No such file or directory" l…
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Dear maxATAC developers,
I followed the install instructions and install it with conda on my Linux Ubuntu workstation, everything works well on installation but I faced difficulty on running maxATA…
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@anthonybejjani had an issue with running `maxatac prepare` where bedGraphToBigWig was not recognized. He was on an LSF system using anaconda.
I followed the install instructions for maxATAC and …
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The `maxatac prepare` function was initially created as a convenience function for filtering, inferring Tn5 sites, and converting cut -site level coverage to min-max normalized bigwig tracks in one st…
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Hello Miraldi Lab! Thanks for generating such a valuable tool, and thanks in advance for your help! I followed installation directions into a dedicated conda environment and began running `maxatac pre…
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We want to test whether we can use DHS data to supplement our ATAC-seq data in our models.
We will use our 11 core TFs. We will split the ATAC-seq 50/50 with DHS data. We will also test a model of…
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We want to test different window (slop) sizes around the Tn5 cut site and its effects on binary and quantitative prediction AUPR and R^2.
We will use 11 TFs and MACS2 peaks based on the slop20b- …
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I've been trying to generate EPS images as described in the documentation (https://www.broadinstitute.org/software/igv/MenuBar). I installed the EPSGraphics Library as suggested into my "~/igv/plugins…
ghost updated
5 years ago