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## Describe the issue
VEP cannot read compressed (gzipped) vcf file as input.
## Additional information
I first tested annotating a test `vcf` which contains only two SNPs with success. Then I gz…
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Hello, we would like to analyze SNPs under selection across different populations (in our case, we have six), and the sample sizes (belove) provided are just examples. Unfortunately, we keep encounter…
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Hi! Thank you for this new program! Could you explain me why I get the error "sorry, Dude. Didn't generate enough snps." during preprocessing?
The error occurs using the function `sample_ts` with …
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Dear @leipzig and developers,
I am testing TileDB-VCF on a SNP dataset derived from a SNP array. It is a combined VCF that spans 2,740 genotyped individuals and ~4,600 SNPs of a non-model species. …
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I am following the Yang2013data tutorial and when running
`df_filt = 0.3 SNP-index in both simulated bulks
Joining with `by = join_by(tricubeDP, CI_95, CI_99)`
Warning message:
There were 5398 war…
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**Is your feature request related to a problem? Please describe.**
It would be nice to be able to store the results of the XRAY Reporter somewhere, either in a file or env variable.
What is "Resul…
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Duplicate SNPs cause the data release to break and issues in data presentation, please refer to https://github.com/EBISPOT/goci/issues/1275 for more details. Ala cleaned up all the existing examples i…
ljwh2 updated
1 month ago
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I have successfully run glmm.score, but am getting the following error with glmm.wald (using gds):
Error in if (is.gds) { : the condition has length > 1
R version 4.4.1 (2024-06-14) -- "Race for Y…
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## Describe the issue
Hi there, thanks for your work on gene annotation. I annotated my fine-mapping variants using VEP, I recently annotated my fine-mapping variants using VEP, and I have some quest…
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Hello! I hope you are doing well! I am trying to use finngen GWAS summary statistics to run MTAG, but I get this error:
Trait 2: Dropped 64331 SNPs for duplicate values in the "snp_name" column
D…