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### PXD001819 Analysis
Currently, we have a workflow that can perform peptide identification using: `-> ms2rescore -> SNR + spectrum properties -> percolator`
Here the results can be found (http…
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- [x] Write simple input that takes tsv or csv file with: peptidoform, spectrum_id, precursor_mz and write to Peptidoforms
- [ ] Write a function that takes a peptidoform removes modifications and ge…
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Hello. I'm trying to use PeptideShaker to process identification files obtained by SearchGUI using several search engines (Comet, OMSSA, Tide, X! Tandem and Sage).
PeptideShaker encounters the follow…
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Given a spectrum, detect the peaks in the spectrum and identify the lines and possible the statistics of those lines to help with the identification of those lines
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Traceback when uploading a pepXML file:
```
Traceback (most recent call last):
File "/home/levitsky/.pyenv/versions/3.11.10/envs/internal_ions/lib/python3.11/site-packages/streamlit/runtime/scr…
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Hi HiTMaP team,
Currently I have been running through your mouse brain example data. However, I encountered an error:
## Codes I used:
```
fastafile
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At least happening for the example dataset.
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Last checked in 2.6.5 dev
Use case: finding exotic lines. Generally speaking, to know where the spectrum knob is pointing at. For example the upper hydrogens beyond CaK, up until delta it is easy …
vnp85 updated
4 months ago
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Distributions of correct and incorrect matches
Search engines assign scores to each peptide sequence that matches the theoretical spectrum. These peptide spectrum matchings are called PSMs. All pep…
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ERROR: cvParam anchor protein should have a value, but it does not!
ERROR: cvParam protein-pair-level global FDR has a value, but it should not!
ERROR: cvParam residue-pair-level global FDR has a valu…