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**Describe the bug**
`spikeinterface.extract_waveforms` has an argument `sparse`. If this is `True` the waveform extractor will only return the waveforms on a subset of channels that it deems impor…
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I am using the latest HS2 on SI and can't get the waveform shapes to save in the output file.
Here my code where save_shape=True:
`sorter_params = {
"chunk_size": None,
"rescale"…
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notebook: /home/zhangdaohan20h / dredge-main / notebook/wulab_DREDge_ks2.ipynb
envs: kilosort4 in zhangdaohan20h
```python
import numpy as np
import matplotlib.pyplot as plt
import spikeinterface.ful…
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This is related to
https://github.com/catalystneuro/neuroconv/issues/995
Check out the lines:
https://github.com/catalystneuro/roiextractors/blob/7592bbac765f19bcbf57b398c979fb9ee1f6c283/src/roie…
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Hello,
When running kilosort4 via spikeinterface, `CUDA out of memory error` occurs immediately after the first clustering.
The error still occurs when setting `clear_cache = True`. But not when …
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Starting container
Installing spikeinterface with github in container
Installing numpy==1.26 with pypi in container
Installing neo with pypi in container
Installing h5py with pypi in container
Ru…
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Hello,
I'm having trouble importing the si GUI in Jupyter notebook. I imported spikeinterface earlier: import spikeinterface.full as si, and followed all the steps in the November 2023 tutorial.
…
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Hi Jean.
I am reading your notebooks.
I think you should use the new spiekinetrface as soon as possible.
If you need a call to help you on this I can.
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It would be great to see one of [these docker files](https://hub.docker.com/u/spikeinterface) integrated, particularly kilosort 3, which requires a GPU.
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# Project title:
### Key Investigators
* Alessio Buccino
* Joe Ziminski @JoeZiminski
* Zach McKenzie @zm711
## Project Description
> Ported from issue https://github.com/SpikeInterface/s…