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Hello,
I am using your visualization tool for RNA-seq data analysis and have a question about how exon inclusion is depicted. The image shows two graphs in different colors (purple on top and red o…
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Hello rpvg team
I have a general question and I would appreciate your help.
I am trying to infer the haplotype expression of human-experiment reads using rpvg.
I have performed the construction o…
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Hello. I have an issue with the visualisation of DROP abberant splicing results. The pipeline worked completely and created the result table and html, but in fds, apparently, there is not enough data …
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* spladder version: last (I guess)
* Python version: 3.9
* Operating System: Ubuntu
I installed spladder by the command pip install spladder under conda environment with python 3.9 since under …
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Hi,
I am getting some error when running Whippet-index.jl, where it complains that it is out of bounds, even though it should still be within the the reference genome:
```
julia Whippet.jl/bin/w…
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Hello!
I am having a recursion limit issue.
Here is my tree:
(AMPQE,(((((BRAPUM,BRAVEN),FURPAR),(CCA3H1,CCA3H2)),ANOCA),PSETE,VARKO,CHICK,(((RATNO,MOUSE),HUMAN),(SORAR,PTEVA))));
These are al…
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Can you please suggest what values should be manually assigned for resolving the following error?
> [17/10/2017 11:26:33] Sorting splice-graphs by read count
> [17/10/2017 11:26:33] Finished s…
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I am trying to make image segmentation task using cntk.
I concatenate bilinear interpolation layers using CNTK.ops.splice function.
However when order of the input tensor changed it gives different …
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* spladder version:3.0.1
* Python version:3.6
* Operating System:CentOS
### Description
I use spladder to detect splicing events in one sample with bam file, The command is: spladder build --p…
swu13 updated
5 months ago
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Hello vg team
It is amazing the work you are doing.
I am relatively new to using vg and I would appreciate a little help with my question please.
I want to download an already constructed human pa…