ratschlab spladder issues

ratschlab / spladder

Tool for the detection and quantification of alternative splicing events from RNA-Seq data.

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issues

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spladder test yields IndexError: index 0 is out of bounds for axis 0 with size 0

#201 careenfoord opened 5 days ago
0
Save space at merge step

#200 zyh4482 opened 1 month ago
0
e2_cov_region in intron_retention output

#199 perllb opened 2 months ago
0
Computation time

#198 Elisa89m opened 3 months ago
0
fix IndexError from write.py line 89

#197 ShixiangWang closed 4 months ago
3
local variable 'genes2' referenced before assignment

#196 ls233 opened 5 months ago
4
how to speed up the merge step of the build utility?

#195 ls233 closed 5 months ago
0
How to estimate PSI of a new input sample on pre-called events

#194 sckinta opened 8 months ago
1
Does SplAdder work with long-read RNA?

#193 jkmh2 closed 5 months ago
2
ValueError Keyword grid

#192 ramikheireddine opened 10 months ago
1
seaborn not found

#191 ramikheireddine closed 5 months ago
3
Execution fails with --psi-min-reads set to specific value

#190 lea-lenhardtackovic opened 1 year ago
1
Spladder viz issue: PDF dimensions out of allowed range

#189 balbachs opened 1 year ago
0
Is_annotated always 3 on negative strand

#188 perllb closed 11 months ago
5
Interpretation of the differential splicing testing results

#187 sneha100895 opened 1 year ago
0
Naming of skipped exons in mutually exclusive events is based on exon length not genomic coordinates

#186 R-Najjar opened 1 year ago
0
viz issue

#185 TracyKoubkovaYu opened 1 year ago
0
gff on gtf

#184 ntsopoul opened 1 year ago
1
About Image output

#183 avrajit opened 1 year ago
2
test run mode - TypeError: Indexing elements must be in increasing order

#182 sergiosenci closed 1 year ago
4
NGS-994: Add Dockerfile

#181 runarfu closed 1 year ago
0
qmode collect step for large cohorts

#180 kate-stankiewicz closed 1 year ago
4
RuntimeWarning: invalid value encountered in subtract

#179 kate-stankiewicz opened 1 year ago
2
TypeError: expected str, bytes or os.PathLike object, not coo_matrix

#178 farshadf closed 1 year ago
4
TypeError: object of type 'Gene' has no len()

#177 MB571 closed 1 year ago
2
Use on large cohorts

#176 andrepessoni opened 1 year ago
6
Test Mode ValueError

#175 JP971 opened 1 year ago
1
build mode issue

#174 khksw0403 closed 1 year ago
4
viz mode issue

#173 selmanurk opened 2 years ago
1
ValueError: NaN, inf or invalid value detected in endog, estimation infeasible

#172 lisagrigoreva opened 2 years ago
2
Index Error during build step

#171 kethselly opened 2 years ago
2
at which stage can i select the confidence threshold?

#170 ArashDepp opened 2 years ago
0
llvmlite.binding' has no attribute 'get_host_cpu_name

#169 ArashDepp opened 2 years ago
3
is_annotated column interpretation in splAdder versions 3.x

#168 tbrunetti closed 2 years ago
3
Spladder accuracy for samples with high multimappers

#167 tbrunetti closed 2 years ago
2
Testing mode fails despite using the default merging strategy

#166 shepp-hub opened 2 years ago
1
Viz test not working

#165 spazm5 closed 2 years ago
3
Running too slow!

#164 ifreeman6 closed 2 years ago
2
Identify novel events with respect to annotation SplAdder v3.0.2

#163 pablommesas closed 2 years ago
4
Index error in write.py for psi value

#162 lunazhaoxxx closed 1 year ago
2
Error in event calling - "Inf" in hdf5

#161 deccagon closed 2 years ago
1
Spladder test stuck

#160 zyh4482 opened 2 years ago
2
How to incorprate public available spladder gff3 result into a new run?

#159 MeilingJinCOH closed 2 years ago
2
Different info between "test_results" and "gff3"

#158 minnie0121 closed 2 years ago
7
IndexError when running spladder

#157 swu13 opened 2 years ago
7
ValueError: The first guess on the deviance function returned a nan. This could be a boundary problem and should be reported.

#156 OnkarMulay opened 2 years ago
0
UnboundLocalError: local variable 'gene_samples' referenced before assignment

#155 OnkarMulay opened 2 years ago
17
splADDER KeyError: 'gene_id'

#154 rvilloutreix closed 2 years ago
6
Index error for spladder build --event-types intron_retention

#153 wir963 closed 2 years ago
4
IndexError during spladder test intron_retension

#152 paulojannig closed 2 years ago
2