-
Here: https://github.com/ga4gh/pedigree_family_history_terminology/blob/main/mappings/kin-to-fhir-FamilyMember.sssom.csv
vs: https://terminology.hl7.org/5.1.0/ValueSet-v3-FamilyMember.html
-
Instead of a special file format, we should perhaps be writing out SSSOM file.
Is that going to make the files even more gigantic? Probably? Is that a problem?
-
This is a task associated with the charter epic #7
### Which mapping tool or framework do you want to introduce to our Working Group?
Simple Standard for Sharing Ontological Mappings (SSSOM)
* …
-
## Overview
Some of the `object_label`s in `mondo.sssom.tsv` are missing or are not in agreement with what is currently in the source.
## Examples
- OMIM, all cases (except where subject or objec…
-
Just as we want to have Babel write SSSOM, NN will need to read it.
-
I don't know if this is feasible for the gene sources yet, but with the new VRS 2.0 xref model, the space is there if we can get them.
-
## Overview
Not sure how my setup is different; I think I'm the only one w/ this issue. But when I do a `poetry install`, I get a message at the end of the installation which says `sssom is not a pa…
-
The mapping pipeline currently generates a sssom file with only the `exact` mappings.
For various use cases, including boomer and mondo source sync, we need `mondo-all.sssom.tsv` as well, which sim…
-
## Overview
Create a converter that takes a SSSOM file and can convert it to a basic robot template.
## Sub-tasks
- [ ] 1. **Functional**: Implement function that can do this
- [ ] 2. **CLI**: W…
-
Dear Planteome team!
Just looked at your great 2024 Planteome Paper, congratulations. I looked at your SSSOM files, and I would suggest the following:
1. Create a registry for all your mapping f…