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Hello,
I'm glad to see your project. It's useful for what I am doing now. But I have a problem to inquire you. I have put this WSI Normalizer in my dataloader, and the transform part is in the functi…
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Add support for Vahadane normalization, as in https://github.com/Peter554/StainTools
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```
/users/sli59/anaconda3/envs/torch_lester/lib/python3.7/site-packages/staintools/stain_normalizer.py:41: RuntimeWarning: divide by zero encountered in true_divide
source_concentrations *= (self…
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I had some ideas of feature requests which could greatly improve the usefulness of your tool.
1. Enable GPU mode (seems to only run on CPU as of now)
2. Enable batch mode (seems to assume that the…
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This feature request was mentioned in issue https://github.com/EIDOSLAB/torchstain/issues/3. However, I believe it would be better to track it in a separate issue.
The idea is basically to introduc…
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Stain normalization in MONAI consists of two components stain extraction and stain normalization. Right now, they are specific to Hematoxylin and Eosin stains but both of these components can be gener…
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* TIA Toolbox version: 1.1.0
* Python version: 3.9
* Operating System: Linux
### Description
We have been investigating some of the Vahadane stain normalization algorithm and we realize that t…
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Hello,
I want to use multiple CPUs to accelerate the function.
When I use your class in multiprocessing, the kernel just freezes, and it does not do anything.
Can you help on this?
Thanks,
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I have scanned WSI using a Hamamatsu Nanozoomer S60 at 40x. Images have been divided into tiles 1000x1000 using openslider. Tissue is from mouse small intestine prepared using a Swiss roll technique, …
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Hello,
I'm glad to see your project, which intergrates 3 main methods for WSI normalizing. It's useful for what I am doing now. But I have a problem to inquire you. I have put this WSI Normali…